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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Thermoplasmatota
Anticodon = TAG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.133757 (10 seq.)
>A171003623
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
835276
835359
+
Leu
TAG
-
¡û
>W141000059
AADL01001282
Unclassified
mine drainage metagenome Group III [AADL]
3608
3691
+
Leu
TAG
[ENA]
¡û
>W141000094
AADL01001552
Unclassified
mine drainage metagenome Group III [AADL]
4700
4785
+
Leu
TAG
[ENA]
¡û
>W141000142
AADL01002015
Unclassified
mine drainage metagenome Group III [AADL]
932
847
-
Leu
TAG
[ENA]
¡û
>A241003732
CP133600
Thermoplasmatota
Ferroplasma acidiphilum [CP133600]
1313955
1314038
+
Leu
TAG
-
¡û
>W2010602122
JABGBP010000007
Thermoplasmatota
Ferroplasma acidiphilum DSM 28986 [JABGBP]
12179
12262
+
Leu
TAG
[ENA]
¡û
>W1610000066
AABC05000010
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
139821
139904
+
Leu
TAG
[ENA]
¡û
>WENV077067
AADL01001282
Acid Mine Drainage microbial communities from Richmond mine
3608
3694
+
Leu
TAG
[ENA]
>WENV077102
AADL01001552
Acid Mine Drainage microbial communities from Richmond mine
4700
4788
+
Leu
TAG
[ENA]
>WENV077150
AADL01002015
Acid Mine Drainage microbial communities from Richmond mine
932
844
-
Leu
TAG
[ENA]
Identical group No.139789 (7 seq.)
>WENV170563466
CZCB01019312
[CZCB] anaerobic digester metagenome; anaerobic digester
404
490
+
Leu
TAG
[ENA]
¡û
>WENV170691078
LFRM01379294
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
27853
27767
-
Leu
TAG
[ENA]
¡û
>WENV170726769
LSQX01393911
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
93541
93455
-
Leu
TAG
[ENA]
¡û
>WENV170970360
MTKW01065030
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1137
1051
-
Leu
TAG
[ENA]
¡û
>W2010277935
CABLZR010000015
Thermoplasmatota
Methanomassiliicoccus luminyensis [CABLZR]
246297
246211
-
Leu
TAG
[ENA]
¡û
>W1610082850
CAJE01000012
Unclassified
Methanomassiliicoccus luminyensis B10 [CAJE]
246297
246211
-
Leu
TAG
[ENA]
¡û
>W1610605382
LFRW01000053
Euryarchaeota
Methanomicrobia archaeon DTU008 [LFRW]
27853
27767
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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