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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Thermoplasmatota
Anticodon = TCG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.294662 (2 seq.)
>W2010277915
CABLZR010000008
Thermoplasmatota
Methanomassiliicoccus luminyensis [CABLZR]
41005
40928
-
Arg
TCG
[ENA]
¡û
>W1610082865
CAJE01000019
Unclassified
Methanomassiliicoccus luminyensis B10 [CAJE]
41005
40928
-
Arg
TCG
[ENA]
¡û
Identical group No.334190 (3 seq.)
>W141000062
AADL01001311
Unclassified
mine drainage metagenome Group III [AADL]
3022
3095
+
Arg
TCG
[ENA]
¡û
>W2010602126
JABGBP010000050
Thermoplasmatota
Ferroplasma acidiphilum DSM 28986 [JABGBP]
700
773
+
Arg
TCG
[ENA]
¡û
>WENV077070
AADL01001311
Acid Mine Drainage microbial communities from Richmond mine
3022
3098
+
Arg
TCG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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