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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Thermoplasmatota
Anticodon = TGA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.74414 (2 seq.)
>W2010277933
CABLZR010000015
Thermoplasmatota
Methanomassiliicoccus luminyensis [CABLZR]
354719
354632
-
Ser
TGA
[ENA]
¡û
>W1610082848
CAJE01000012
Unclassified
Methanomassiliicoccus luminyensis B10 [CAJE]
354719
354632
-
Ser
TGA
[ENA]
¡û
Identical group No.248491 (10 seq.)
>A171003627
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
1460010
1460090
+
Ser
TGA
-
¡û
>A171006615
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
433946
434026
+
Ser
TGA
-
¡û
>W141000043
AADL01001071
Unclassified
mine drainage metagenome Group III [AADL]
3653
3733
+
Ser
TGA
[ENA]
¡û
>W141000068
AADL01001481
Unclassified
mine drainage metagenome Group III [AADL]
24038
24120
+
Ser
TGA
[ENA]
¡û
>A241003668
CP133597
Thermoplasmatota
Ferroplasma sp. [CP133597]
696673
696755
+
Ser
TGA
-
¡û
>A241003720
CP133600
Thermoplasmatota
Ferroplasma acidiphilum [CP133600]
55878
55958
+
Ser
TGA
-
¡û
>W2010602147
JABGBP010000332
Thermoplasmatota
Ferroplasma acidiphilum DSM 28986 [JABGBP]
5898
5818
-
Ser
TGA
[ENA]
¡û
>W1610000075
AABC05000014
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
115892
115972
+
Ser
TGA
[ENA]
¡û
>WENV077051
AADL01001071
Acid Mine Drainage microbial communities from Richmond mine
3653
3736
+
Ser
TGA
[ENA]
>WENV077076
AADL01001481
Acid Mine Drainage microbial communities from Richmond mine
24038
24123
+
Ser
TGA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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