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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Thermoplasmatota
Anticodon = TTC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275676 (8 seq.)
>A171003638
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
700194
700119
-
Glu
TTC
-
¡û
>A171006630
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1567863
1567788
-
Glu
TTC
-
¡û
>W141000064
AADL01001356
Unclassified
mine drainage metagenome Group III [AADL]
2258
2181
-
Glu
TTC
[ENA]
¡û
>A241003663
CP133597
Thermoplasmatota
Ferroplasma sp. [CP133597]
447578
447653
+
Glu
TTC
-
¡û
>A241003741
CP133600
Thermoplasmatota
Ferroplasma acidiphilum [CP133600]
1162981
1162906
-
Glu
TTC
-
¡û
>W2010602143
JABGBP010000308
Thermoplasmatota
Ferroplasma acidiphilum DSM 28986 [JABGBP]
1542
1617
+
Glu
TTC
[ENA]
¡û
>W1610000067
AABC05000010
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
4739
4662
-
Glu
TTC
[ENA]
¡û
>WENV077072
AADL01001356
Acid Mine Drainage microbial communities from Richmond mine
2259
2180
-
Glu
TTC
[ENA]
Identical group No.294663 (2 seq.)
>W2010277918
CABLZR010000012
Thermoplasmatota
Methanomassiliicoccus luminyensis [CABLZR]
100199
100124
-
Glu
TTC
[ENA]
¡û
>W1610082863
CAJE01000015
Unclassified
Methanomassiliicoccus luminyensis B10 [CAJE]
100199
100124
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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