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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Thermoplasmatota
Anticodon = TTG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.538525 (12 seq.)
>A171003625
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
944693
944767
+
Gln
TTG
-
¡û
>A171006629
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1804738
1804812
+
Gln
TTG
-
¡û
>W141000061
AADL01001298
Unclassified
mine drainage metagenome Group III [AADL]
7213
7287
+
Gln
TTG
[ENA]
¡û
>W141000097
AADL01001573
Unclassified
mine drainage metagenome Group III [AADL]
2273
2201
-
Gln
TTG
[ENA]
¡û
>W141000131
AADL01001867
Unclassified
mine drainage metagenome Group III [AADL]
1945
2017
+
Gln
TTG
[ENA]
¡û
>A241003661
CP133597
Thermoplasmatota
Ferroplasma sp. [CP133597]
266149
266224
+
Gln
TTG
-
¡û
>A241003734
CP133600
Thermoplasmatota
Ferroplasma acidiphilum [CP133600]
1421878
1421952
+
Gln
TTG
-
¡û
>W2010602138
JABGBP010000246
Thermoplasmatota
Ferroplasma acidiphilum DSM 28986 [JABGBP]
343
269
-
Gln
TTG
[ENA]
¡û
>W1610000069
AABC05000011
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
71759
71833
+
Gln
TTG
[ENA]
¡û
>WENV077069
AADL01001298
Acid Mine Drainage microbial communities from Richmond mine
7213
7290
+
Gln
TTG
[ENA]
>WENV077104
AADL01001573
Acid Mine Drainage microbial communities from Richmond mine
2273
2198
-
Gln
TTG
[ENA]
>WENV077139
AADL01001867
Acid Mine Drainage microbial communities from Richmond mine
1945
2020
+
Gln
TTG
[ENA]
Identical group No.664580 (2 seq.)
>W2010277927
CABLZR010000014
Thermoplasmatota
Methanomassiliicoccus luminyensis [CABLZR]
10330
10256
-
Gln
TTG
[ENA]
¡û
>W1610082860
CAJE01000013
Unclassified
Methanomassiliicoccus luminyensis B10 [CAJE]
10330
10255
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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