This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tilapia Farm, microbial fraction from prebead pond at Kent SeaTech (Salton Sea, CA) (SRP000162)
Anticodon = CAT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.300188 (6 seq.)
>W141216205
AZUR01000001
Betaproteobacteria
Pseudogulbenkiania sp. MAI-1 [AZUR]
3594041
3593965
-
Met
CAT
[ENA]
¡û
>ENV08001524
ABNG01009897
freshwater metagenome; microbial fraction from prebead pond at Kent SeaTech (Salton Sea, CA)
35
111
+
Met
CAT
[ENA]
¡û
>W09125772
ACIS01000001
Betaproteobacteria
Pseudogulbenkiania ferrooxidans 2002 [ACIS]
499504
499580
+
Met
CAT
[ENA]
¡û
>SRA1001615
SRR001074.15275
Tilapia Farm, microbial fraction from prebead pond at Kent SeaTech (Salton Sea, CA) (SRP000162)
35
111
+
Met
CAT
[SRA]
>W10111510
ADDK01000015
Betaproteobacteria
Azospira oryzae PS [ADDK]
33268
33344
+
Met
CAT
[ENA]
¡û
>C121000556
AP012224
Betaproteobacteria
Pseudogulbenkiania sp. NH8B [AP012224]
3641758
3641682
-
Met
CAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK