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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tilapia Farm, microbial fraction from tilapia pond at Kent SeaTech (Salton See, CA) (SRP000161)
Anticodon = ACG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.321320 (8 seq.)
>ENV08001519
ABNF01031683
freshwater metagenome; microbial fraction from tilapia pond at Kent SeaTech (Salton See, CA)
4
80
+
Arg
ACG
[ENA]
¡û
>W1910941830
NJFZ01000017
Bacteroidota
Flectobacillus sp. BAB-3569 [NJFZ]
155504
155580
+
Arg
ACG
[ENA]
¡û
>W1910941831
NJFZ01000017
Bacteroidota
Flectobacillus sp. BAB-3569 [NJFZ]
152696
152622
-
Arg
ACG
[ENA]
¡û
>SRA1001594
SRR001073.6058
Tilapia Farm, microbial fraction from tilapia pond at Kent SeaTech (Salton See, CA) (SRP000161)
4
80
+
Arg
ACG
[SRA]
>W2010434987
JAAAKT010000040
Bacteroidota
Emticicia sp. ODNR4P [JAAAKT]
9165
9239
+
Arg
ACG
[ENA]
¡û
>W2010434989
JAAAKT010000040
Bacteroidota
Emticicia sp. ODNR4P [JAAAKT]
6355
6281
-
Arg
ACG
[ENA]
¡û
>W2010984653
NJFZ01000017
Bacteroidota
Flectobacillus sp. BAB-3569 [NJFZ]
155504
155580
+
Arg
ACG
[ENA]
¡û
>W2010984654
NJFZ01000017
Bacteroidota
Flectobacillus sp. BAB-3569 [NJFZ]
152696
152622
-
Arg
ACG
[ENA]
¡û
Identical group No.332693 (3 seq.)
>ENV08001507
ABNF01009973
freshwater metagenome; microbial fraction from tilapia pond at Kent SeaTech (Salton See, CA)
7
83
+
Arg
ACG
[ENA]
¡û
>WENV170643432
JFJP01056053
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
3175
3251
+
Arg
ACG
[ENA]
¡û
>SRA1001606
SRR001073.36865
Tilapia Farm, microbial fraction from tilapia pond at Kent SeaTech (Salton See, CA) (SRP000161)
7
83
+
Arg
ACG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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