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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tilapia Farm, microbial fraction from tilapia pond at Kent SeaTech (Salton See, CA) (SRP000161)
Anticodon = CAT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.310548 (48 seq.)
>W1711293544
LZYT01000052
Bacillota
Clostridium felsineum DSM 794 [LZYT]
311
387
+
Met
CAT
[ENA]
¡û
>W1711293629
LZYV01000099
Firmicutes
Clostridium roseum (LZYV) roseum [LZYV]
314
390
+
Met
CAT
[ENA]
¡û
>W1711293709
LZYW01000140
Firmicutes
Clostridium aurantibutyricum (LZYW) aurantibutyricum [LZYW]
260
336
+
Met
CAT
[ENA]
¡û
>W1711293769
LZYX01000004
Bacillota
Clostridium acetobutylicum [LZYX]
87050
87126
+
Met
CAT
[ENA]
¡û
>W1711293790
LZYX01000013
Bacillota
Clostridium acetobutylicum [LZYX]
127
203
+
Met
CAT
[ENA]
¡û
>W1711293826
LZYY01000010
Bacillota
Clostridium acetobutylicum [LZYY]
57
133
+
Met
CAT
[ENA]
¡û
>W1711293846
LZYY01000016
Bacillota
Clostridium acetobutylicum [LZYY]
644
568
-
Met
CAT
[ENA]
¡û
>W1711902973
MZGV01000091
Bacillota
Clostridium oryzae [MZGV]
1041
967
-
Met
CAT
[ENA]
¡û
>C004959
AE001437
Bacillota
Clostridium acetobutylicum ATCC 824 [AE001437]
14497
14573
+
Met
CAT
[Ensembl]
¡û
>C004993
AE001437
Bacillota
Clostridium acetobutylicum ATCC 824 [AE001437]
3338114
3338038
-
Met
CAT
[Ensembl]
¡û
>WENV180326904
OBKS01233697
[OBKS] human gut metagenome; human gut
221
145
-
Ile2
CAT
[ENA]
¡û
>WENV180474788
OBYS01051681
[OBYS] human gut metagenome; faeces
134
58
-
Ile2
CAT
[ENA]
¡û
>WENV181449907
OGDX01028120
[OGDX] metagenome; Human gut stool
585
659
+
Ile2
CAT
[ENA]
¡û
>WENV182075208
OHFQ01049759
[OHFQ] human gut metagenome; feces
82
6
-
Ile2
CAT
[ENA]
¡û
>WENV182838210
OKGO01003248
[OKGO] human gut metagenome; human gut
61
137
+
Ile2
CAT
[ENA]
¡û
>WENV183282798
OLSC01025897
[OLSC] human gut metagenome; faeces
497
421
-
Ile2
CAT
[ENA]
¡û
>ENV08001509
ABNF01012941
freshwater metagenome; microbial fraction from tilapia pond at Kent SeaTech (Salton See, CA)
9
85
+
Met
CAT
[ENA]
¡û
>WENV170563607
CZCB01022830
[CZCB] anaerobic digester metagenome; anaerobic digester
3851
3775
-
Met
CAT
[ENA]
¡û
>W1910888191
NERJ01000008
Bacillota
Clostridium acetobutylicum JB200 [NERJ]
86972
87048
+
Met
CAT
[ENA]
¡û
>SRA1001613
SRR001073.55216
Tilapia Farm, microbial fraction from tilapia pond at Kent SeaTech (Salton See, CA) (SRP000161)
9
85
+
Met
CAT
[SRA]
>W1810394209
PYBN01000003
Bacillota
Clostridium sp. NJ4 [PYBN]
609461
609537
+
Met
CAT
[ENA]
¡û
>W1810394214
PYBN01000004
Bacillota
Clostridium sp. NJ4 [PYBN]
773109
773033
-
Met
CAT
[ENA]
¡û
>W2010583858
JAAZWQ010000020
Bacillota
Clostridium acetobutylicum DJ038 [JAAZWQ]
592
516
-
Ile2
CAT
[ENA]
¡û
>W2010586101
JABANX010000033
Bacillota
Clostridium acetobutylicum DJ103 [JABANX]
592
516
-
Ile2
CAT
[ENA]
¡û
>W2010600355
JABFUK010000001
Bacillota
Clostridium acetobutylicum DJ074 [JABFUK]
1950412
1950488
+
Ile2
CAT
[ENA]
¡û
>W2010600383
JABFUK010000001
Bacillota
Clostridium acetobutylicum DJ074 [JABFUK]
1332962
1332886
-
Ile2
CAT
[ENA]
¡û
>W2010601747
JABFUZ010000001
Bacillota
Clostridium acetobutylicum DJ313 [JABFUZ]
943754
943830
+
Ile2
CAT
[ENA]
¡û
>W2010601789
JABFUZ010000001
Bacillota
Clostridium acetobutylicum DJ313 [JABFUZ]
326295
326219
-
Ile2
CAT
[ENA]
¡û
>W2010627029
JABTAD010000001
Bacillota
Clostridium acetobutylicum DJ310 [JABTAD]
1433633
1433557
-
Ile2
CAT
[ENA]
¡û
>W2010627076
JABTAD010000003
Bacillota
Clostridium acetobutylicum DJ310 [JABTAD]
444809
444885
+
Ile2
CAT
[ENA]
¡û
>W2010631097
JABTDX010000001
Bacillota
Clostridium acetobutylicum DJ024 [JABTDX]
771152
771228
+
Ile2
CAT
[ENA]
¡û
>W2010631139
JABTDX010000001
Bacillota
Clostridium acetobutylicum DJ024 [JABTDX]
153697
153621
-
Ile2
CAT
[ENA]
¡û
>W2010662446
JACBAB010000001
Bacillota
Clostridium acetobutylicum DJ311 [JACBAB]
765905
765981
+
Ile2
CAT
[ENA]
¡û
>W2010662488
JACBAB010000001
Bacillota
Clostridium acetobutylicum DJ311 [JACBAB]
148404
148328
-
Ile2
CAT
[ENA]
¡û
>W2010952817
NERJ01000008
Bacillota
Clostridium acetobutylicum JB200 [NERJ]
86972
87048
+
Ile2
CAT
[ENA]
¡û
>W2012036709
VIBM01000010
Bacillota
Clostridium acetobutylicum BOH3 [VIBM]
592
516
-
Ile2
CAT
[ENA]
¡û
>W2110453927
JAESWC010000014
Bacillota
Clostridium sp. YIM B02515 [JAESWC]
433116
433040
-
Ile2
CAT
[ENA]
¡û
>W2110453951
JAESWC010000022
Bacillota
Clostridium sp. YIM B02515 [JAESWC]
1021
945
-
Ile2
CAT
[ENA]
¡û
>C231376194
CP096980
Bacillota
Clostridium felsineum DSM 794 [CP096980]
90807
90731
-
Ile2
CAT
-
¡û
>C231376200
CP096983
Bacillota
Clostridium felsineum DSM 7320 [CP096983]
216262
216338
+
Ile2
CAT
-
¡û
>C231376293
CP096986
Bacillota
Clostridium felsineum DSM 6424 [CP096986]
4653914
4653990
+
Ile2
CAT
-
¡û
>C231376419
CP096988
Bacillota
Clostridium felsineum DSM 793 [CP096988]
3118133
3118057
-
Ile2
CAT
-
¡û
>C11104553
CP002660
Bacillota
Clostridium acetobutylicum DSM 1731 [CP002660]
14497
14573
+
Met
CAT
[Ensembl]
¡û
>C11104587
CP002660
Bacillota
Clostridium acetobutylicum DSM 1731 [CP002660]
3339740
3339664
-
Met
CAT
[Ensembl]
¡û
>C11104626
CP002118
Bacillota
Clostridium acetobutylicum EA 2018 [CP002118]
14497
14573
+
Met
CAT
[Ensembl]
¡û
>C11104662
CP002118
Bacillota
Clostridium acetobutylicum EA 2018 [CP002118]
3337370
3337294
-
Met
CAT
[Ensembl]
¡û
>W1511357557
JRWL01000011
Bacillota
Clostridium acetobutylicum GXAS18-1 [JRWL]
87431
87507
+
Met
CAT
[ENA]
¡û
>W1511707448
LGVB01000016
Bacillota
Clostridium sp. DMHC 10 [LGVB]
366272
366348
+
Met
CAT
[ENA]
¡û
Identical group No.324842 (17 seq.)
>WENV181427956
OGCU01000405
[OGCU] metagenome; Human gut stool
20761
20685
-
Met
CAT
[ENA]
¡û
>WENV181561585
OGJD01019570
[OGJD] metagenome; Human gut stool
572
648
+
Met
CAT
[ENA]
¡û
>WENV181580376
OGJZ01052897
[OGJZ] metagenome; Human gut stool
509
433
-
Met
CAT
[ENA]
¡û
>WENV181623917
OGMJ01000485
[OGMJ] metagenome; Human gut stool
21018
21094
+
Met
CAT
[ENA]
¡û
>W141171008
AXZF01000206
Fusobacteriota
Cetobacterium somerae ATCC BAA-474 [AXZF]
118
194
+
Met
CAT
[ENA]
¡û
>WENV181869739
OGWY01000608
[OGWY] human gut metagenome; faeces
24436
24360
-
Met
CAT
[ENA]
¡û
>ENV08001510
ABNF01013481
freshwater metagenome; microbial fraction from tilapia pond at Kent SeaTech (Salton See, CA)
18
94
+
Met
CAT
[ENA]
¡û
>SRA1001597
SRR001073.12657
Tilapia Farm, microbial fraction from tilapia pond at Kent SeaTech (Salton See, CA) (SRP000161)
18
94
+
Met
CAT
[SRA]
>W2010270676
CABKSZ020000131
Fusobacteriota
Cetobacterium somerae [CABKSZ]
17835
17911
+
Met
CAT
[ENA]
¡û
>W2010713544
JACHTH010000005
Fusobacteriota
Cetobacterium sp. 2G large [JACHTH]
414211
414135
-
Met
CAT
[ENA]
¡û
>W2010713563
JACHTH010000007
Fusobacteriota
Cetobacterium sp. 2G large [JACHTH]
607683
607759
+
Met
CAT
[ENA]
¡û
>W2010713569
JACHTH010000007
Fusobacteriota
Cetobacterium sp. 2G large [JACHTH]
449624
449548
-
Met
CAT
[ENA]
¡û
>C231318820
CP092519
Fusobacteriota
Cetobacterium somerae CS2105-BJ [CP092519]
1462651
1462727
+
Met
CAT
-
¡û
>W1511347887
JRJZ01000085
Fusobacteriota
Cetobacterium sp. ZWU0022 [JRJZ]
38097
38021
-
Met
CAT
[ENA]
¡û
>W1511347889
JRJZ01000117
Fusobacteriota
Cetobacterium sp. ZWU0022 [JRJZ]
112591
112515
-
Met
CAT
[ENA]
¡û
>W1511347895
JRJZ01000132
Fusobacteriota
Cetobacterium sp. ZWU0022 [JRJZ]
190
114
-
Met
CAT
[ENA]
¡û
>W1511403692
JTLI01000053
Fusobacteriota
Cetobacterium sp. ZOR0034 [JTLI]
10440
10516
+
Met
CAT
[ENA]
¡û
Identical group No.748759 (2 seq.)
>ENV08001518
ABNF01031528
freshwater metagenome; microbial fraction from tilapia pond at Kent SeaTech (Salton See, CA)
96
22
-
Met
CAT
[ENA]
¡û
>SRA1001604
SRR001073.27219
Tilapia Farm, microbial fraction from tilapia pond at Kent SeaTech (Salton See, CA) (SRP000161)
96
22
-
Met
CAT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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