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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tilapia Farm, microbial fraction from tilapia pond at Kent SeaTech (Salton See, CA) (SRP000161)
Anticodon = CGG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.313629 (47 seq.)
>W1710892493
LNDU01000051
Nitrospirota
Nitrospira sp. Ga0074138 [LNDU]
14018
14094
+
Pro
CGG
[ENA]
¡û
>W1711385784
MEEP01000154
Nitrospirota
Nitrospira sp. SCN 59-13 [MEEP]
1605
1681
+
Pro
CGG
[ENA]
¡û
>WENV180041208
LLBZ010064546
[LLBZ] soil metagenome; soil from tomato rhizosphere
147
71
-
Pro
CGG
[ENA]
¡û
>WENV180283417
OBID01000032
[OBID] metagenome; sludge
17294
17218
-
Pro
CGG
[ENA]
¡û
>WENV180354568
OBLQ011922938
[OBLQ] soil metagenome; soil
129
53
-
Pro
CGG
[ENA]
¡û
>WENV181168361
OEIU01299732
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
157
81
-
Pro
CGG
[ENA]
¡û
>WENV181172308
OEIV010595276
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
90
166
+
Pro
CGG
[ENA]
¡û
>WENV181192156
OEPS010438149
[OEPS] soil metagenome; soil
139
63
-
Pro
CGG
[ENA]
¡û
>WENV183725311
PJQE01232069
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
189
265
+
Pro
CGG
[ENA]
¡û
>ENV08001508
ABNF01012766
freshwater metagenome; microbial fraction from tilapia pond at Kent SeaTech (Salton See, CA)
31
107
+
Pro
CGG
[ENA]
¡û
>WENV170551404
CXWJ01006772
[CXWJ] wastewater metagenome; activated sludge
9562
9486
-
Pro
CGG
[ENA]
¡û
>WENV170552092
CXWJ01038277
[CXWJ] wastewater metagenome; activated sludge
1396
1320
-
Pro
CGG
[ENA]
¡û
>WENV170552941
CXWK01004341
[CXWK] wastewater metagenome; activated sludge
24025
23949
-
Pro
CGG
[ENA]
¡û
>WENV170556071
CXWL01004547
[CXWL] groundwater metagenome; biofilm material
1900
1976
+
Pro
CGG
[ENA]
¡û
>WENV170556266
CXWL01006357
[CXWL] groundwater metagenome; biofilm material
3100
3176
+
Pro
CGG
[ENA]
¡û
>WENV170556890
CXWL01015673
[CXWL] groundwater metagenome; biofilm material
2068
1992
-
Pro
CGG
[ENA]
¡û
>WENV170557735
CXWL01035666
[CXWL] groundwater metagenome; biofilm material
1533
1457
-
Pro
CGG
[ENA]
¡û
>WENV170565746
FKKE01000362
[FKKE] freshwater metagenome; freshwater
5996
5920
-
Pro
CGG
[ENA]
¡û
>WENV170565802
FKKE01001018
[FKKE] freshwater metagenome; freshwater
15720
15796
+
Pro
CGG
[ENA]
¡û
>WENV170576353
FRDC01000435
[FRDC] freshwater metagenome; water
167437
167361
-
Pro
CGG
[ENA]
¡û
>WENV170577896
FSSH01002472
[FSSH] freshwater metagenome; drinking water
11777
11701
-
Pro
CGG
[ENA]
¡û
>WENV170653484
JRYJ01002145
[JRYJ] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
11060
10984
-
Pro
CGG
[ENA]
¡û
>WENV170709406
LNFM01000317
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
14014
14090
+
Pro
CGG
[ENA]
¡û
>WENV170713932
LNFM01047201
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2313
2389
+
Pro
CGG
[ENA]
¡û
>WENV170973821
MTKY01051110
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
14817
14741
-
Pro
CGG
[ENA]
¡û
>W1910204674
FJVM01000007
Nitrospirota
Nitrospira cf. moscoviensis SBR1015 [FJVM]
167437
167361
-
Pro
CGG
[ENA]
¡û
>W1910204744
FJVM02000061
Nitrospirota
Nitrospira cf. moscoviensis SBR1015 [FJVM]
9028
8952
-
Pro
CGG
[ENA]
¡û
>W1910204748
FJVN01000021
Nitrospirota
Nitrospira cf. moscoviensis SBR1015 [FJVN]
5996
5920
-
Pro
CGG
[ENA]
¡û
>W1910441987
FWEX01000006
Nitrospirota
Nitrospira sp. ND1 [FWEX]
640540
640464
-
Pro
CGG
[ENA]
¡û
>SRA1001599
SRR001073.13403
Tilapia Farm, microbial fraction from tilapia pond at Kent SeaTech (Salton See, CA) (SRP000161)
31
107
+
Pro
CGG
[SRA]
>SRA1002062
SRR001308.218790
Metagenomic characterization of a wastewater treatment plant (SRP000180)
249
173
-
Pro
CGG
[SRA]
>C151086589
CP011801
Nitrospirota
Nitrospira moscoviensis NSP M-1 [CP011801]
1074031
1074107
+
Pro
CGG
-
¡û
>W2010405412
FWEX01000006
Nitrospirota
Nitrospira sp. ND1 [FWEX]
640540
640464
-
Pro
CGG
[ENA]
¡û
>W2110115320
CAJNBJ010000001
Nitrospirota
Nitrospira defluvii [CAJNBJ]
40472
40396
-
Pro
CGG
[ENA]
¡û
>C201201657
CP047423
Unclassified
Candidatus Nitrospira sp. comreactor17 [CP047423]
2414386
2414310
-
Pro
CGG
-
¡û
>C211096021
CP054184
Nitrospirota
Nitrospira sp. [CP054184]
1170469
1170393
-
Pro
CGG
-
¡û
>C241267233
CP126121
Nitrospirota
Nitrospira sp. [CP126121]
4490424
4490348
-
Pro
CGG
-
¡û
>C241267289
CP126123
Nitrospirota
Nitrospira sp. [CP126123]
1782402
1782326
-
Pro
CGG
-
¡û
>C10109721
FP929003
Nitrospirota
Nitrospira defluvii [FP929003]
1210875
1210951
+
Pro
CGG
[Ensembl]
¡û
>C161107288
LN885086
Nitrospirota
Candidatus Nitrospira inopinata [LN885086]
3127365
3127289
-
Pro
CGG
[Ensembl]
¡û
>W1610121148
CZPZ01000005
Nitrospirota
Candidatus Nitrospira nitrificans [CZPZ]
62106
62030
-
Pro
CGG
[ENA]
¡û
>W1610121216
CZQA01000010
Nitrospirota
Candidatus Nitrospira nitrosa [CZQA]
38259
38183
-
Pro
CGG
[ENA]
¡û
>W1610574661
JZQY01000033
Nitrospirota
Nitrospira sp. OLB3 [JZQY]
244144
244220
+
Pro
CGG
[ENA]
¡û
>W1610752759
LNDU01000051
Nitrospirota
Nitrospira sp. Ga0074138 [LNDU]
14018
14094
+
Pro
CGG
[ENA]
¡û
>W1710123852
CZPZ01000005
Nitrospirota
Candidatus Nitrospira nitrificans [CZPZ]
62106
62030
-
Pro
CGG
[ENA]
¡û
>W1710123920
CZQA01000010
Nitrospirota
Candidatus Nitrospira nitrosa [CZQA]
38259
38183
-
Pro
CGG
[ENA]
¡û
>W1710691896
JZQY01000033
Nitrospirota
Nitrospira sp. OLB3 [JZQY]
244144
244220
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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