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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tilapia Farm, microbial fraction from tilapia pond at Kent SeaTech (Salton See, CA) (SRP000161)
Anticodon = CTC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.536795 (19 seq.)
>WENV180210113
OBAL01106623
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
329
401
+
Glu
CTC
[ENA]
¡û
>WENV180214569
OBAP01013181
[OBAP] marine metagenome; ENVO:00002010 for 'seawater
325
249
-
Glu
CTC
[ENA]
¡û
>WENV180394826
OBPS01099621
[OBPS] marine metagenome; ENVO:00002010 seawater
192
118
-
Glu
CTC
[ENA]
¡û
>WENV181126340
OEFV01047039
[OEFV] marine metagenome; Particulate matter on a 0.22 Um pore size filter
265
193
-
Glu
CTC
[ENA]
¡û
>WENV181162910
OEIO01037760
[OEIO] marine metagenome; sea ice
405
480
+
Glu
CTC
[ENA]
¡û
>WENV181320966
OFKJ01003547
[OFKJ] marine metagenome; sea ice
683
608
-
Glu
CTC
[ENA]
¡û
>WENV181322076
OFKP01003538
[OFKP] marine metagenome; sea ice
307
235
-
Glu
CTC
[ENA]
¡û
>WENV181323518
OFKY01003224
[OFKY] marine metagenome; sea ice
268
195
-
Glu
CTC
[ENA]
¡û
>WENV181323862
OFKZ01015473
[OFKZ] marine metagenome; sea ice
635
563
-
Glu
CTC
[ENA]
¡û
>WENV183616980
OOEE01022232
[OOEE] marine metagenome; sea ice
231
303
+
Glu
CTC
[ENA]
¡û
>WENV183617715
OOEG01058959
[OOEG] marine metagenome; sea ice
156
228
+
Glu
CTC
[ENA]
¡û
>WENV183621364
OOFT01071670
[OOFT] marine metagenome; sea ice
277
204
-
Glu
CTC
[ENA]
¡û
>WENV183628400
OOGN01034891
[OOGN] marine metagenome; sea ice
457
529
+
Glu
CTC
[ENA]
¡û
>WENV183631298
OOGU01071248
[OOGU] marine metagenome; sea ice
162
90
-
Glu
CTC
[ENA]
¡û
>ENV08001504
ABNF01003292
freshwater metagenome; microbial fraction from tilapia pond at Kent SeaTech (Salton See, CA)
37
110
+
Glu
CTC
[ENA]
¡û
>WENV170992641
MWWB01060366
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
354
426
+
Glu
CTC
[ENA]
¡û
>SRA1001605
SRR001073.30525
Tilapia Farm, microbial fraction from tilapia pond at Kent SeaTech (Salton See, CA) (SRP000161)
37
110
+
Glu
CTC
[SRA]
>SRA1014480
SRR023845.158258
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
12
84
+
Glu
CTC
[SRA]
>SRA1015496
SRR023846.84483
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
188
260
+
Glu
CTC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK