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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tilapia Farm, microbial fraction from tilapia pond at Kent SeaTech (Salton See, CA) (SRP000161)
Anticodon = CTT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.513096 (13 seq.)
>W1711409698
MGPB01000021
Betaproteobacteria
Curvibacter sp. GWA2_63_95 [MGPB]
485595
485520
-
Lys
CTT
[ENA]
¡û
>W1711721696
MTJN01000002
Betaproteobacteria
Rhodoferax fermentans [MTJN]
1082056
1082131
+
Lys
CTT
[ENA]
¡û
>W1910726037
MGPD01000032
Betaproteobacteria
Curvibacter sp. RIFCSPHIGHO2_12_FULL_63_18 [MGPD]
251782
251707
-
Lys
CTT
[ENA]
¡û
>W1911139410
NOXW01000021
Betaproteobacteria
Rhodoferax sp. TH121 [NOXW]
778553
778628
+
Lys
CTT
[ENA]
¡û
>SRA1001607
SRR001073.38505
Tilapia Farm, microbial fraction from tilapia pond at Kent SeaTech (Salton See, CA) (SRP000161)
39
111
+
Lys
CTT
[SRA]
>W1810305911
PTQY01000002
Betaproteobacteria
Rhodoferax sp. TS-BS-61-7 [PTQY]
499083
499158
+
Lys
CTT
[ENA]
¡û
>W2010859465
MGPD01000032
Betaproteobacteria
Curvibacter sp. RIFCSPHIGHO2_12_FULL_63_18 [MGPD]
251782
251707
-
Lys
CTT
[ENA]
¡û
>W2011014910
NOXW01000021
Betaproteobacteria
Rhodoferax sp. TH121 [NOXW]
778553
778628
+
Lys
CTT
[ENA]
¡û
>W2011753126
SZVI01000013
Betaproteobacteria
Rhodoferax sp. BLA1 [SZVI]
954023
954098
+
Lys
CTT
[ENA]
¡û
>W2011958412
VAHD01000003
Betaproteobacteria
Rhodoferax sp. GSA243-2 [VAHD]
146964
147039
+
Lys
CTT
[ENA]
¡û
>W2110600591
JAHFZF010000040
Betaproteobacteria
Rhodoferax sp. U11-2br [JAHFZF]
12360
12285
-
Lys
CTT
[ENA]
¡û
>W2110734448
JAJCTH010000006
Betaproteobacteria
Rhodoferax sp. U2-2l [JAJCTH]
76984
76909
-
Lys
CTT
[ENA]
¡û
>W2130043390
NRRK01000039
Betaproteobacteria
Rhodoferax fermentans DSM 10138 [NRRK]
7699
7624
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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