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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tilapia Farm, microbial fraction from tilapia pond at Kent SeaTech (Salton See, CA) (SRP000161)
Anticodon = GCA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.536794 (2 seq.)
>ENV08001502
ABNF01001068
freshwater metagenome; microbial fraction from tilapia pond at Kent SeaTech (Salton See, CA)
107
33
-
Cys
GCA
[ENA]
¡û
>SRA1001601
SRR001073.21352
Tilapia Farm, microbial fraction from tilapia pond at Kent SeaTech (Salton See, CA) (SRP000161)
107
33
-
Cys
GCA
[SRA]
Identical group No.748755 (3 seq.)
>WENV181170374
OEIV010042307
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
529
456
-
Cys
GCA
[ENA]
¡û
>ENV08001503
ABNF01001859
freshwater metagenome; microbial fraction from tilapia pond at Kent SeaTech (Salton See, CA)
40
113
+
Cys
GCA
[ENA]
¡û
>SRA1001593
SRR001073.5909
Tilapia Farm, microbial fraction from tilapia pond at Kent SeaTech (Salton See, CA) (SRP000161)
40
113
+
Cys
GCA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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