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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = AGA
HIT:
21 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.25431 (1 seq.)
>C231340986
CP094187
Unclassified
Candidatus Nasuia deltocephalinicola HMCO [CP094187]
115902
115992
+
Ser
AGA
-
¡û
Identical group No.29256 (1 seq.)
>C231340906
CP094184
Unclassified
Candidatus Nasuia deltocephalinicola MIPI [CP094184]
112651
112739
+
Ser
AGA
-
¡û
Identical group No.44118 (1 seq.)
>C231340932
CP094185
Unclassified
Candidatus Nasuia deltocephalinicola KIPI [CP094185]
111242
111331
+
Ser
AGA
-
¡û
Identical group No.47913 (1 seq.)
>C231340856
CP094182
Unclassified
Candidatus Nasuia deltocephalinicola NHBR [CP094182]
99673
99586
-
Ser
AGA
-
¡û
Identical group No.47914 (1 seq.)
>C231340958
CP094186
Unclassified
Candidatus Nasuia deltocephalinicola KIMY [CP094186]
112767
112856
+
Ser
AGA
-
¡û
Identical group No.74867 (1 seq.)
>C211032504
CP024850
Unclassified
Candidatus Nasuia deltocephalinicola YC [CP024850]
73101
73187
+
Ser
AGA
-
¡û
Identical group No.80179 (1 seq.)
>C231341002
CP094188
Unclassified
Candidatus Nasuia deltocephalinicola EHBR [CP094188]
13617
13703
+
Ser
AGA
-
¡û
Identical group No.85721 (1 seq.)
>C231340828
CP094180
Unclassified
Candidatus Nasuia deltocephalinicola WOBR [CP094180]
112803
112890
+
Ser
AGA
-
¡û
Identical group No.90946 (1 seq.)
>C231340880
CP094183
Unclassified
Candidatus Nasuia deltocephalinicola MIPS [CP094183]
113093
113180
+
Ser
AGA
-
¡û
Identical group No.98901 (2 seq.)
>W1511615785
LCNJ01000008
Unclassified
Candidatus Moranbacteria bacterium GW2011_GWE2_47_10 bacterium GW2011_GWE2_47_10 [LCNJ]
8239
8328
+
Ser
AGA
[ENA]
¡û
>W1511617743
LCPX01000008
Unclassified
Candidatus Moranbacteria bacterium GW2011_GWE1_49_15 bacterium GW2011_GWE1_49_15 [LCPX]
11688
11777
+
Ser
AGA
[ENA]
¡û
Identical group No.103443 (2 seq.)
>C231533753
CP110502
Unclassified
Candidatus Vidania fulgoroideae [CP110502]
55648
55732
+
Ser
AGA
-
¡û
>C231533762
CP110503
Unclassified
Candidatus Vidania fulgoroideae [CP110503]
3533
3617
+
Ser
AGA
-
¡û
Identical group No.112568 (1 seq.)
>C211290571
CP071410
Unclassified
Candidatus Vidania fulgoroideae [CP071410]
48441
48525
+
Ser
AGA
-
¡û
Identical group No.124242 (1 seq.)
>C211127547
CP060019
Unclassified
Candidatus Nasuia deltocephalinicola [CP060019]
94462
94378
-
Ser
AGA
-
¡û
Identical group No.124638 (2 seq.)
>W1910705897
MFEK01000007
Unclassified
Candidatus Doudnabacteria bacterium RIFCSPHIGHO2_01_FULL_46_14 [MFEK]
56425
56341
-
Ser
AGA
[ENA]
¡û
>W2010839323
MFEK01000007
Unclassified
Candidatus Doudnabacteria bacterium RIFCSPHIGHO2_01_FULL_46_14 [MFEK]
56425
56341
-
Ser
AGA
[ENA]
¡û
Identical group No.134790 (2 seq.)
>C231354525
CP094967
Unclassified
Candidatus Vidania fulgoroideae [CP094967]
50322
50407
+
Ser
AGA
-
¡û
>C231354551
CP094968
Unclassified
Candidatus Vidania fulgoroideae [CP094968]
50312
50396
+
Ser
AGA
-
¡û
Identical group No.134856 (2 seq.)
>C231533709
CP110500
Unclassified
Candidatus Vidania fulgoroideae [CP110500]
15752
15835
+
Ser
AGA
-
¡û
>C231533738
CP110501
Unclassified
Candidatus Vidania fulgoroideae [CP110501]
109533
109450
-
Ser
AGA
-
¡û
Identical group No.150019 (1 seq.)
>C211290594
CP071411
Unclassified
Candidatus Vidania fulgoroideae [CP071411]
48596
48679
+
Ser
AGA
-
¡û
Identical group No.168809 (1 seq.)
>C211290617
CP071412
Unclassified
Candidatus Vidania fulgoroideae [CP071412]
50704
50789
+
Ser
AGA
-
¡û
Identical group No.200682 (1 seq.)
>C231354500
CP094966
Unclassified
Candidatus Vidania fulgoroideae [CP094966]
50379
50461
+
Ser
AGA
-
¡û
Identical group No.606397 (2 seq.)
>W1911494167
OBKC01036750
Unclassified
bacterium [OBKC]
299
227
-
Ser
AGA
[ENA]
¡û
>W2011155118
OBKC01036750
Unclassified
bacterium [OBKC]
299
227
-
Ser
AGA
[ENA]
¡û
Identical group No.709818 (1 seq.)
>W141203118
AZHW01001606
Unclassified
Candidatus Entotheonella factor sp. TSY1 [AZHW]
417
342
-
Ser
AGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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