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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = AGC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.284365 (1 seq.)
>W1511604314
LBYP01000021
Unclassified
Parcubacteria group bacterium GW2011_GWA2_40_23 GW2011_GWA2_40_23 [LBYP]
9773
9850
+
Ala
AGC
[ENA]
¡û
Identical group No.284374 (5 seq.)
>W1511597816
LBQD01000001
Unclassified
Candidatus Moranbacteria bacterium GW2011_GWE2_35_2- bacterium GW2011_GWE2_35_2- [LBQD]
153094
153171
+
Ala
AGC
[ENA]
¡û
>W1511599056
LBRW01000015
Unclassified
Candidatus Moranbacteria bacterium GW2011_GWF1_36_4 bacterium GW2011_GWF1_36_4 [LBRW]
9596
9519
-
Ala
AGC
[ENA]
¡û
>W1511599705
LBSS01000001
Unclassified
Candidatus Moranbacteria bacterium GW2011_GWF2_37_11 bacterium GW2011_GWF2_37_11 [LBSS]
119163
119086
-
Ala
AGC
[ENA]
¡û
>W1511599973
LBSZ01000008
Unclassified
Candidatus Moranbacteria bacterium GW2011_GWD1_37_17 bacterium GW2011_GWD1_37_17 [LBSZ]
26646
26723
+
Ala
AGC
[ENA]
¡û
>W1511600043
LBTC01000001
Unclassified
Candidatus Moranbacteria bacterium GW2011_GWE1_37_24 bacterium GW2011_GWE1_37_24 [LBTC]
153109
153186
+
Ala
AGC
[ENA]
¡û
Identical group No.399087 (1 seq.)
>W2110083065
CAINMD010000015
Unclassified
Candidatus Uhrbacteria bacterium [CAINMD]
11491
11417
-
Ala
AGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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