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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = AGT
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.342898 (2 seq.)
>C141004445
CP006059
Betaproteobacteria
Candidatus Nasuia deltocephalinicola str. NAS-ALF [CP006059]
5321
5396
+
Thr
AGT
[Ensembl]
¡û
>C211127534
CP060019
Unclassified
Candidatus Nasuia deltocephalinicola [CP060019]
5322
5397
+
Thr
AGT
-
¡û
Identical group No.515949 (4 seq.)
>W1930016031
MHCA01000024
Unclassified
Candidatus Blackburnbacteria bacterium RIFCSPHIGHO2_12_FULL_41_13b [MHCA]
1801
1874
+
Thr
AGT
[ENA]
¡û
>W1930016033
MHCD01000002
Unclassified
Candidatus Blackburnbacteria bacterium RIFCSPLOWO2_01_FULL_41_27 [MHCD]
5729
5802
+
Thr
AGT
[ENA]
¡û
>W2030022109
MHCA01000024
Unclassified
Candidatus Blackburnbacteria bacterium RIFCSPHIGHO2_12_FULL_41_13b [MHCA]
1801
1874
+
Thr
AGT
[ENA]
¡û
>W2030022111
MHCD01000002
Unclassified
Candidatus Blackburnbacteria bacterium RIFCSPLOWO2_01_FULL_41_27 [MHCD]
5729
5802
+
Thr
AGT
[ENA]
¡û
Identical group No.544238 (1 seq.)
>C231340832
CP094180
Unclassified
Candidatus Nasuia deltocephalinicola WOBR [CP094180]
93393
93321
-
Thr
AGT
-
¡û
Identical group No.544244 (1 seq.)
>C231340990
CP094187
Unclassified
Candidatus Nasuia deltocephalinicola HMCO [CP094187]
93060
92988
-
Thr
AGT
-
¡û
Identical group No.618683 (1 seq.)
>C231340884
CP094183
Unclassified
Candidatus Nasuia deltocephalinicola MIPS [CP094183]
93344
93272
-
Thr
AGT
-
¡û
Identical group No.618689 (1 seq.)
>C231340910
CP094184
Unclassified
Candidatus Nasuia deltocephalinicola MIPI [CP094184]
93103
93031
-
Thr
AGT
-
¡û
Identical group No.618694 (1 seq.)
>C231340936
CP094185
Unclassified
Candidatus Nasuia deltocephalinicola KIPI [CP094185]
93195
93123
-
Thr
AGT
-
¡û
Identical group No.668818 (1 seq.)
>C231340962
CP094186
Unclassified
Candidatus Nasuia deltocephalinicola KIMY [CP094186]
93249
93177
-
Thr
AGT
-
¡û
Identical group No.831919 (1 seq.)
>C211032523
CP024850
Unclassified
Candidatus Nasuia deltocephalinicola YC [CP024850]
49659
49586
-
Thr
AGT
-
¡û
Identical group No.832337 (2 seq.)
>C231340845
CP094182
Unclassified
Candidatus Nasuia deltocephalinicola NHBR [CP094182]
5985
6056
+
Thr
AGT
-
¡û
>C231341016
CP094188
Unclassified
Candidatus Nasuia deltocephalinicola EHBR [CP094188]
107283
107212
-
Thr
AGT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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