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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = ATC
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.212667 (4 seq.)
>W1910718658
MGAD01000028
Unclassified
Candidatus Roizmanbacteria bacterium RIFCSPHIGHO2_12_FULL_42_10 [MGAD]
15245
15164
-
Asp
ATC
[ENA]
¡û
>W1910719138
MGAS01000028
Unclassified
Candidatus Roizmanbacteria bacterium RIFCSPLOWO2_01_FULL_42_14 [MGAS]
15146
15227
+
Asp
ATC
[ENA]
¡û
>W2010852084
MGAD01000028
Unclassified
Candidatus Roizmanbacteria bacterium RIFCSPHIGHO2_12_FULL_42_10 [MGAD]
15245
15164
-
Undet
NNN
[ENA]
¡û
>W2010852564
MGAS01000028
Unclassified
Candidatus Roizmanbacteria bacterium RIFCSPLOWO2_01_FULL_42_14 [MGAS]
15146
15227
+
Undet
NNN
[ENA]
¡û
Identical group No.235622 (4 seq.)
>W1910718303
MFZT01000026
Unclassified
Candidatus Roizmanbacteria bacterium RIFCSPHIGHO2_02_FULL_43_11 [MFZT]
11876
11795
-
Asp
ATC
[ENA]
¡û
>W1910719436
MGBC01000011
Unclassified
Candidatus Roizmanbacteria bacterium RIFCSPLOWO2_02_FULL_43_10 [MGBC]
25573
25492
-
Asp
ATC
[ENA]
¡û
>W2010851729
MFZT01000026
Unclassified
Candidatus Roizmanbacteria bacterium RIFCSPHIGHO2_02_FULL_43_11 [MFZT]
11876
11795
-
Undet
NNN
[ENA]
¡û
>W2010852862
MGBC01000011
Unclassified
Candidatus Roizmanbacteria bacterium RIFCSPLOWO2_02_FULL_43_10 [MGBC]
25573
25492
-
Undet
NNN
[ENA]
¡û
Identical group No.793976 (1 seq.)
>W2010370296
CAHJWR010000815
Unclassified
Terrabacteria group bacterium [CAHJWR]
947
1020
+
Asp
ATC
[ENA]
¡û
Identical group No.896258 (4 seq.)
>W1910740381
MHSW01000035
Unclassified
Candidatus Terrybacteria bacterium RIFCSPLOWO2_01_FULL_40_23 [MHSW]
14412
14342
-
Asp
ATC
[ENA]
¡û
>W2010873811
MHSW01000035
Unclassified
Candidatus Terrybacteria bacterium RIFCSPLOWO2_01_FULL_40_23 [MHSW]
14412
14342
-
Asp
ATC
[ENA]
¡û
>W1511604005
LBYG01000015
Unclassified
Parcubacteria group bacterium GW2011_GWB1_40_14 GW2011_GWB1_40_14 [LBYG]
26955
27025
+
Asp
ATC
[ENA]
¡û
>W1511605137
LBZU01000027
Unclassified
Parcubacteria group bacterium GW2011_GWA2_40_8 GW2011_GWA2_40_8 [LBZU]
2201
2271
+
Asp
ATC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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