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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = CTA
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.58834 (2 seq.)
>W1910713607
MFQD01000034
Unclassified
Candidatus Magasanikbacteria bacterium RIFCSPHIGHO2_02_FULL_50_9b [MFQD]
25790
25702
-
STOP
CTA
[ENA]
¡û
>W2010847033
MFQD01000034
Unclassified
Candidatus Magasanikbacteria bacterium RIFCSPHIGHO2_02_FULL_50_9b [MFQD]
25790
25702
-
Sup
CTA
[ENA]
¡û
Identical group No.150978 (2 seq.)
>W1910742959
MHXC01000018
Unclassified
Parcubacteria group bacterium RIFCSPHIGHO2_01_FULL_47_10b [MHXC]
3782
3869
+
STOP
CTA
[ENA]
¡û
>W2010876391
MHXC01000018
Unclassified
Parcubacteria group bacterium RIFCSPHIGHO2_01_FULL_47_10b [MHXC]
3782
3869
+
Ser
GCT
[ENA]
¡û
Identical group No.795279 (2 seq.)
>W2110084202
CAIOSK010000007
Unclassified
Candidatus Yanofskybacteria bacterium [CAIOSK]
32847
32775
-
Sup
CTA
[ENA]
¡û
>W2110087838
CAIUCV010000020
Unclassified
Candidatus Yanofskybacteria bacterium [CAIUCV]
11119
11191
+
Sup
CTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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