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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Uroviricota
Anticodon = CCA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.751054 (15 seq.)
>WENV180117193
OARD01000835
[OARD] human gut metagenome; ENVO:feces
298
224
-
Trp
CCA
[ENA]
¡û
>WENV181474220
OGFC01003504
[OGFC] metagenome; Human gut stool
4869
4795
-
Trp
CCA
[ENA]
¡û
>WENV181837067
OGVK01001424
[OGVK] freshwater metagenome; freshwater
2798
2724
-
Trp
CCA
[ENA]
¡û
>WENV182519830
OIWQ01000019
[OIWQ] human gut metagenome; faeces
19837
19911
+
Trp
CCA
[ENA]
¡û
>WENV183282106
OLSC01000836
[OLSC] human gut metagenome; faeces
6151
6225
+
Trp
CCA
[ENA]
¡û
>WENV183779894
PPYF01157559
[PPYF] human gut metagenome; stool from patient with Crohn's disease
64884
64810
-
Trp
CCA
[ENA]
¡û
>WENV183788564
PPYF01370165
[PPYF] human gut metagenome; stool from patient with Crohn's disease
11608
11534
-
Trp
CCA
[ENA]
¡û
>PHG181001273
KR269720
Myoviridae
Klebsiella phage PKO111 (KR269720)
3617
3543
-
Trp
CCA
[ENA]
¡û
>PHG181001456
KT239446
Myoviridae
Klebsiella phage JD18 (KT239446)
60440
60366
-
Trp
CCA
[ENA]
¡û
>PHG181002616
KX258185
Myoviridae
Klebsiella phage vB_KpnM_KpV477 (KX258185)
71528
71454
-
Trp
CCA
[ENA]
¡û
>PHG181003749
KY000080
Myoviridae
Klebsiella phage KPV15 (KY000080)
80733
80659
-
Trp
CCA
[ENA]
¡û
>PHG181007205
MG751100
Myoviridae
Klebsiella phage KP1 (MG751100)
59912
59838
-
Trp
CCA
[ENA]
¡û
>PHG181008005
MH333064
Myoviridae
Klebsiella phage Mineola (MH333064)
69121
69047
-
Trp
CCA
[ENA]
¡û
>W1810641987
QIYJ01000045
Gammaproteobacteria
Klebsiella variicola WUSM_KV_13 [QIYJ]
11518
11592
+
Trp
CCA
[ENA]
¡û
>C231095609
CP062992
Uroviricota
Klebsiella phage AShe-2020a [CP062992]
13590
13516
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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