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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Uroviricota
Anticodon = GAT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.540992 (7 seq.)
>PHG183000206
KT239446
Myoviridae
Klebsiella phage JD18 (KT239446)
60522
60447
-
Ile
GAT
[ENA]
¡û
>PHG183000448
KX258185
Myoviridae
Klebsiella phage vB_KpnM_KpV477 (KX258185)
71610
71535
-
Ile
GAT
[ENA]
¡û
>PHG183000568
KY000080
Myoviridae
Klebsiella phage KPV15 (KY000080)
80815
80740
-
Ile
GAT
[ENA]
¡û
>PHG183001381
MG751100
Myoviridae
Klebsiella phage KP1 (MG751100)
59994
59919
-
Ile
GAT
[ENA]
¡û
>PHG183001639
MH333064
Myoviridae
Klebsiella phage Mineola (MH333064)
69203
69128
-
Ile
GAT
[ENA]
¡û
>W1830012633
QIYJ01000045
Gammaproteobacteria
Klebsiella variicola WUSM_KV_13 [QIYJ]
11436
11511
+
Ile
GAT
[ENA]
¡û
>C233001642
CP062992
Uroviricota
Klebsiella phage AShe-2020a [CP062992]
13672
13597
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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