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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Uroviricota
Anticodon = GTC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.540990 (7 seq.)
>PHG183000154
KR269720
Myoviridae
Klebsiella phage PKO111 (KR269720)
4513
4438
-
Asp
GTC
[ENA]
¡û
>PHG183000202
KT239446
Myoviridae
Klebsiella phage JD18 (KT239446)
61336
61261
-
Asp
GTC
[ENA]
¡û
>PHG183000565
KY000080
Myoviridae
Klebsiella phage KPV15 (KY000080)
81629
81554
-
Asp
GTC
[ENA]
¡û
>PHG183001378
MG751100
Myoviridae
Klebsiella phage KP1 (MG751100)
60808
60733
-
Asp
GTC
[ENA]
¡û
>PHG183001635
MH333064
Myoviridae
Klebsiella phage Mineola (MH333064)
70016
69941
-
Asp
GTC
[ENA]
¡û
>W1830012629
QIYJ01000045
Gammaproteobacteria
Klebsiella variicola WUSM_KV_13 [QIYJ]
10621
10696
+
Asp
GTC
[ENA]
¡û
>C233001639
CP062992
Uroviricota
Klebsiella phage AShe-2020a [CP062992]
14485
14410
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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