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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Uroviricota
Anticodon = GTT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.210790 (17 seq.)
>WENV180117263
OARD01018811
[OARD] human gut metagenome; ENVO:feces
231
147
-
Asn
GTT
[ENA]
¡û
>WENV181474265
OGFC01004624
[OGFC] metagenome; Human gut stool
4000
4084
+
Asn
GTT
[ENA]
¡û
>WENV182519827
OIWQ01000019
[OIWQ] human gut metagenome; faeces
18603
18687
+
Asn
GTT
[ENA]
¡û
>WENV183282104
OLSC01000836
[OLSC] human gut metagenome; faeces
5093
5177
+
Asn
GTT
[ENA]
¡û
>WENV183779891
PPYF01157559
[PPYF] human gut metagenome; stool from patient with Crohn's disease
66118
66034
-
Asn
GTT
[ENA]
¡û
>WENV183780415
PPYF01171691
[PPYF] human gut metagenome; stool from patient with Crohn's disease
3185
3101
-
Asn
GTT
[ENA]
¡û
>WENV183788562
PPYF01370165
[PPYF] human gut metagenome; stool from patient with Crohn's disease
12842
12758
-
Asn
GTT
[ENA]
¡û
>PHG181001270
KR269720
Myoviridae
Klebsiella phage PKO111 (KR269720)
4851
4767
-
Asn
GTT
[ENA]
¡û
>PHG181001454
KT239446
Myoviridae
Klebsiella phage JD18 (KT239446)
61674
61590
-
Asn
GTT
[ENA]
¡û
>PHG181002612
KX258185
Myoviridae
Klebsiella phage vB_KpnM_KpV477 (KX258185)
72740
72656
-
Asn
GTT
[ENA]
¡û
>PHG181003746
KY000080
Myoviridae
Klebsiella phage KPV15 (KY000080)
81967
81883
-
Asn
GTT
[ENA]
¡û
>PHG181004684
LT614807
Myoviridae
Cronobacter phage Pet-CM3-4 (LT614807)
74866
74782
-
Asn
GTT
[ENA]
¡û
>PHG181007202
MG751100
Myoviridae
Klebsiella phage KP1 (MG751100)
61146
61062
-
Asn
GTT
[ENA]
¡û
>PHG181008003
MH333064
Myoviridae
Klebsiella phage Mineola (MH333064)
70354
70270
-
Asn
GTT
[ENA]
¡û
>PHG14102654
KF835987
Myoviridae
Pectobacterium bacteriophage PM2 Ea9-2 (KF835987)
74846
74762
-
Asn
GTT
[ENA]
¡û
>W1810641985
QIYJ01000045
Gammaproteobacteria
Klebsiella variicola WUSM_KV_13 [QIYJ]
10283
10367
+
Asn
GTT
[ENA]
¡û
>C231095606
CP062992
Uroviricota
Klebsiella phage AShe-2020a [CP062992]
14823
14739
-
Asn
GTT
[ENA]
¡û
Identical group No.916680 (4 seq.)
>PHG0100360
CP000315
Uroviricota
Clostridium phage phiSM101 [CP000315]
19635
19562
-
Asn
GTT
[ENA]
¡û
>C191008027
CP000315
Uroviricota
Clostridium phage phiSM101 [CP000315]
19635
19562
-
Asn
GTT
-
¡û
>C241016408
CP000315
Uroviricota
Clostridium phage phiSM101 [CP000315]
19635
19562
-
Asn
GTT
[ENA]
¡û
>W2011765614
UAWF01000014
Bacillota
Clostridium perfringens NCTC8798 [UAWF]
28106
28179
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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