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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Uroviricota
Anticodon = TCC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.751084 (5 seq.)
>WENV182519831
OIWQ01000019
[OIWQ] human gut metagenome; faeces
19917
19991
+
Gly
TCC
[ENA]
¡û
>WENV183779895
PPYF01157559
[PPYF] human gut metagenome; stool from patient with Crohn's disease
64804
64730
-
Gly
TCC
[ENA]
¡û
>PHG181002617
KX258185
Myoviridae
Klebsiella phage vB_KpnM_KpV477 (KX258185)
71448
71374
-
Gly
TCC
[ENA]
¡û
>PHG181008006
MH333064
Myoviridae
Klebsiella phage Mineola (MH333064)
69041
68967
-
Gly
TCC
[ENA]
¡û
>C231095610
CP062992
Uroviricota
Klebsiella phage AShe-2020a [CP062992]
13510
13436
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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