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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Uroviricota
Anticodon = TCT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.384288 (5 seq.)
>WENV181474223
OGFC01003504
[OGFC] metagenome; Human gut stool
1682
1606
-
Arg
TCT
[ENA]
¡û
>WENV183282109
OLSC01000836
[OLSC] human gut metagenome; faeces
9073
9149
+
Arg
TCT
[ENA]
¡û
>PHG181001276
KR269720
Myoviridae
Klebsiella phage PKO111 (KR269720)
426
350
-
Arg
TCT
[ENA]
¡û
>PHG181007208
MG751100
Myoviridae
Klebsiella phage KP1 (MG751100)
56981
56905
-
Arg
TCT
[ENA]
¡û
>C231095612
CP062992
Uroviricota
Klebsiella phage AShe-2020a [CP062992]
10837
10761
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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