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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Uroviricota
Anticodon = TGT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.541046 (9 seq.)
>WENV180117214
OARD01001678
[OARD] human gut metagenome; ENVO:feces
254
329
+
Thr
TGT
[ENA]
¡û
>WENV182519835
OIWQ01000019
[OIWQ] human gut metagenome; faeces
23030
23105
+
Thr
TGT
[ENA]
¡û
>WENV183788568
PPYF01370165
[PPYF] human gut metagenome; stool from patient with Crohn's disease
7948
7873
-
Thr
TGT
[ENA]
¡û
>PHG181001278
KR269720
Myoviridae
Klebsiella phage PKO111 (KR269720)
160
85
-
Thr
TGT
[ENA]
¡û
>PHG181001461
KT239446
Myoviridae
Klebsiella phage JD18 (KT239446)
57247
57172
-
Thr
TGT
[ENA]
¡û
>PHG181003754
KY000080
Myoviridae
Klebsiella phage KPV15 (KY000080)
77506
77431
-
Thr
TGT
[ENA]
¡û
>PHG181007210
MG751100
Myoviridae
Klebsiella phage KP1 (MG751100)
56814
56739
-
Thr
TGT
[ENA]
¡û
>PHG181008010
MH333064
Myoviridae
Klebsiella phage Mineola (MH333064)
65334
65259
-
Thr
TGT
[ENA]
¡û
>C231095614
CP062992
Uroviricota
Klebsiella phage AShe-2020a [CP062992]
10670
10595
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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