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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Varidnaviria
Anticodon = GTG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.684196 (4 seq.)
>WENV170707484
LNAP01022332
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
98
26
-
His
GTG
[ENA]
¢þ
>WENV170707592
LNAP01026544
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
3233
3161
-
His
GTG
[ENA]
¢þ
>WENV170708241
LNAP01061773
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
98
26
-
His
GTG
[ENA]
¢þ
>VRL181000496
AP017398
Varidnaviria
Tokyovirus A1 (AP017398)
5265
5337
+
His
GTG
[ENA]
¡û
Identical group No.793228 (2 seq.)
>VRL181000642
KY523104
Varidnaviria
Tupanvirus soda lake (KY523104)
136126
136055
-
His
GTG
[ENA]
¡û
>VRL181000708
MF405918
Varidnaviria
Tupanvirus deep ocean (MF405918)
138938
138867
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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