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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Viridiplantae
Anticodon = CCG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.335821 (7 seq.)
>WENV183635732
OOIX01000025
[OOIX] human gut metagenome; mucous membran biopsy from the gut
1187
1114
-
Arg
CCG
[ENA]
¢þ
>WENV183635991
OOJJ01000002
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
73
146
+
Arg
CCG
[ENA]
¢þ
>WENV183636825
OONO01245820
[OONO] human gut metagenome; mucous membran biopsy from the gut
265
192
-
Arg
CCG
[ENA]
¢þ
>CHL1810001521
EU998740
Viridiplantae
Pinus contorta (EU998740)
42965
42892
-
Arg
CCG
[ENA]
¡û
>CHL1810008003
KC427272
Viridiplantae
Pinus massoniana (KC427272)
42721
42648
-
Arg
CCG
[ENA]
¡û
>CHL1810008032
KC427273
Viridiplantae
Pinus taeda (KC427273)
43459
43386
-
Arg
CCG
[ENA]
¡û
>CHL1810019184
KR476379
Viridiplantae
Pinus sylvestris (KR476379)
42694
42621
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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