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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Viridiplantae
Anticodon = CCT
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.23384 (1 seq.)
>CHL1810021695
KT625415
Viridiplantae
Hafniomonas laevis (KT625415)
154955
155045
+
Arg
CCT
[ENA]
¡û
Identical group No.38856 (1 seq.)
>CHL1810040789
KY407660
Viridiplantae
Neodangemannia microcystis (KY407660)
7938
8027
+
Arg
CCT
[ENA]
¡û
Identical group No.55412 (1 seq.)
>CHL090101943
DQ291132
Viridiplantae
Oltmannsiellopsis viridis
56717
56631
-
Arg
CCT
[ENA]
¡û
Identical group No.523564 (2 seq.)
>CHL1810001394
EU677193
Viridiplantae
Oedogonium cardiacum SAG 575-1b (EU677193)
180142
180214
+
Arg
CCT
[ENA]
¡û
>CHL1810001403
EU677193
Viridiplantae
Oedogonium cardiacum SAG 575-1b (EU677193)
96769
96697
-
Arg
CCT
[ENA]
¡û
Identical group No.536487 (1 seq.)
>CHL1830000144
GQ892829
Viridiplantae
Bryopsis hypnoides (GQ892829)
132865
132939
+
Arg
CCT
[ENA]
¡û
Identical group No.561502 (1 seq.)
>CHL1810015020
KM462879
Viridiplantae
Paradoxia multiseta (KM462879)
159620
159548
-
Arg
CCT
[ENA]
¡û
Identical group No.572101 (1 seq.)
>CHL1810005983
JX402620
Viridiplantae
Trebouxiophyceae sp. MX-AZ01 (JX402620)
131471
131399
-
Arg
CCT
[ENA]
¡û
Identical group No.762133 (1 seq.)
>CHL090101667
AY835431
Viridiplantae
Pseudendoclonium akinetum
157127
157054
-
Arg
CCT
[ENA]
¡û
Identical group No.770439 (1 seq.)
>CHL1810032881
KX342867
Viridiplantae
Ulva prolifera (KX342867)
89705
89634
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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