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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Viridiplantae
Anticodon = CGT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.670050 (6 seq.)
>CHL1810012577
KJ690264
Viridiplantae
Centaurea diffusa (KJ690264)
30782
30855
+
Thr
CGT
[ENA]
¡û
>CHL1810014232
KM207677
Viridiplantae
Carthamus tinctorius (KM207677)
30883
30956
+
Thr
CGT
[ENA]
¡û
>CHL1810017350
KP299292
Viridiplantae
Cynara humilis (KP299292)
30679
30752
+
Thr
CGT
[ENA]
¡û
>CHL1810018040
KP842706
Viridiplantae
Cynara baetica (KP842706)
30688
30761
+
Thr
CGT
[ENA]
¡û
>CHL1810018069
KP842707
Viridiplantae
Cynara cornigera (KP842707)
30642
30715
+
Thr
CGT
[ENA]
¡û
>CHL1810020377
KT267161
Viridiplantae
Silybum marianum (KT267161)
31095
31168
+
Thr
CGT
[ENA]
¡û
Identical group No.684361 (3 seq.)
>CHL1810024162
KU041648
Viridiplantae
Saussurea involucrata (KU041648)
128600
128673
+
Thr
CGT
[ENA]
¡û
>CHL1810034293
KX622799
Viridiplantae
Saussurea chabyoungsanica (KX622799)
30536
30609
+
Thr
CGT
[ENA]
¡û
>CHL1810054394
MF695711
Viridiplantae
Saussurea polylepis (MF695711)
30576
30649
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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