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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Viridiplantae
Anticodon = GGG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.306401 (18 seq.)
>WENV182644281
OJLW01018656
[OJLW] metagenome; surface
418
345
-
Pro
GGG
[ENA]
¢þ
>CHL1810000006
AB480043
Viridiplantae
Cedrus deodara (AB480043)
54990
55063
+
Pro
GGG
[ENA]
¡û
>CHL1810000054
AB480556
Viridiplantae
Picea morrisonicola (AB480556)
15967
15894
-
Pro
GGG
[ENA]
¡û
>CHL1810000063
AB501189
Viridiplantae
Larix decidua (AB501189)
76431
76504
+
Pro
GGG
[ENA]
¡û
>CHL1810000119
AB601120
Viridiplantae
Pseudotsuga sinensis var. wilsoniana (AB601120)
107670
107743
+
Pro
GGG
[ENA]
¡û
>CHL1810001534
EU998741
Viridiplantae
Pinus gerardiana (EU998741)
103497
103570
+
Pro
GGG
[ENA]
¡û
>CHL1810001580
EU998743
Viridiplantae
Pinus lambertiana (EU998743)
103095
103168
+
Pro
GGG
[ENA]
¡û
>CHL1810001604
EU998745
Viridiplantae
Pinus monophylla (EU998745)
103000
103073
+
Pro
GGG
[ENA]
¡û
>CHL1810002832
HF937082
Viridiplantae
Picea abies (HF937082)
109116
109189
+
Pro
GGG
[ENA]
¡û
>CHL1810017522
KP412541
Viridiplantae
Pinus armandii (KP412541)
103092
103165
+
Pro
GGG
[ENA]
¡û
>CHL1810019532
KR873010
Viridiplantae
Pinus bungeana (KR873010)
103754
103827
+
Pro
GGG
[ENA]
¡û
>CHL1810020814
KT337318
Viridiplantae
Picea jezoensis (KT337318)
109101
109174
+
Pro
GGG
[ENA]
¡û
>CHL1810022361
KT723438
Viridiplantae
Pinus sibirica (KT723438)
102167
102240
+
Pro
GGG
[ENA]
¡û
>CHL1810039907
KY204450
Viridiplantae
Picea crassifolia (KY204450)
109188
109261
+
Pro
GGG
[ENA]
¡û
>CHL1810039935
KY204451
Viridiplantae
Picea asperata (KY204451)
109193
109266
+
Pro
GGG
[ENA]
¡û
>CHL1810046999
LC095867
Viridiplantae
Pseudolarix amabilis (LC095867)
78483
78556
+
Pro
GGG
[ENA]
¡û
>CHL1810054540
MF795085
Viridiplantae
Larix sibirica (MF795085)
76486
76559
+
Pro
GGG
[ENA]
¡û
>CHL090101409
AY228468
Viridiplantae
Pinus koraiensis
102970
103043
+
Pro
GGG
[ENA]
¡û
Identical group No.335820 (10 seq.)
>W1711904749
MZNY01000074
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Enteritidis [MZNY]
511
584
+
Pro
GGG
[ENA]
¡û
>WENV183636011
OOJJ01000037
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
1587
1514
-
Pro
GGG
[ENA]
¢þ
>WENV183636755
OONO01004030
[OONO] human gut metagenome; mucous membran biopsy from the gut
506
579
+
Pro
GGG
[ENA]
¢þ
>CHL1810001509
EU998740
Viridiplantae
Pinus contorta (EU998740)
107024
107097
+
Pro
GGG
[ENA]
¡û
>CHL1810007989
KC427272
Viridiplantae
Pinus massoniana (KC427272)
106256
106329
+
Pro
GGG
[ENA]
¡û
>CHL1810008018
KC427273
Viridiplantae
Pinus taeda (KC427273)
108058
108131
+
Pro
GGG
[ENA]
¡û
>CHL1810018020
KP771703
Viridiplantae
Pinus taiwanensis (KP771703)
106381
106454
+
Pro
GGG
[ENA]
¡û
>CHL1810019170
KR476379
Viridiplantae
Pinus sylvestris (KR476379)
106258
106331
+
Pro
GGG
[ENA]
¡û
>CHL1810022634
KT740995
Viridiplantae
Pinus tabuliformis (KT740995)
106263
106336
+
Pro
GGG
[ENA]
¡û
>CHL090101826
D17510
Viridiplantae
Pinus thunbergii
106259
106332
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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