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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Viridiplantae
Anticodon = TCG
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.335818 (1 seq.)
>CHL1810001398
EU677193
Viridiplantae
Oedogonium cardiacum SAG 575-1b (EU677193)
126145
126070
-
Arg
TCG
[ENA]
¡û
Identical group No.414368 (1 seq.)
>CHL1810021654
KT625413
Viridiplantae
Jenufa perforata (KT625413)
54350
54277
-
Arg
TCG
[ENA]
¡û
Identical group No.421730 (1 seq.)
>CHL1810020054
KT199255
Viridiplantae
Ankyra judayi SAG 17.84 (KT199255)
70843
70918
+
Arg
TCG
[ENA]
¡û
Identical group No.421734 (1 seq.)
>CHL1810021683
KT625414
Viridiplantae
Jenufa minuta (KT625414)
65283
65208
-
Arg
TCG
[ENA]
¡û
Identical group No.428357 (1 seq.)
>CHL1810034054
KX507373
Viridiplantae
Oedocladium carolinianum (KX507373)
137437
137512
+
Arg
TCG
[ENA]
¡û
Identical group No.438763 (1 seq.)
>CHL1810001775
FJ556581
Viridiplantae
Alsophila spinulosa (FJ556581)
56596
56669
+
Arg
TCG
[ENA]
¡û
Identical group No.438788 (1 seq.)
>CHL1810021551
KT625410
Viridiplantae
Treubaria triappendiculata (KT625410)
70554
70629
+
Arg
TCG
[ENA]
¡û
Identical group No.445229 (1 seq.)
>CHL1810021623
KT625412
Viridiplantae
Oogamochlamys gigantea (KT625412)
130508
130435
-
Arg
TCG
[ENA]
¡û
Identical group No.536371 (1 seq.)
>CHL1810002351
GQ892829
Viridiplantae
Bryopsis hypnoides (GQ892829)
130316
130241
-
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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