This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Vulcanimicrobiota
Anticodon = ACG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.365108 (5 seq.)
>WENV183092564
OLLG01000146
[OLLG] soil metagenome; soil
3997
4071
+
Arg
ACG
[ENA]
¡û
>WENV170649126
JRHI01006740
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
939
1014
+
Arg
ACG
[ENA]
¡û
>W2010578507
JAAXCW010000008
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXCW]
110904
110829
-
Arg
ACG
[ENA]
¡û
>W2110093944
CAJCIN010000048
Alphaproteobacteria
Rhodospirillales bacterium [CAJCIN]
2428
2354
-
Arg
ACG
[ENA]
¡û
>W2130007205
CAJCIV010000338
Acidobacteriota
Acidobacteriaceae bacterium [CAJCIV]
3057
2983
-
Arg
ACG
[ENA]
¡û
Identical group No.445484 (3 seq.)
>W2010578931
JAAXLX010000074
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXLX]
5389
5463
+
Arg
ACG
[ENA]
¡û
>W2010578993
JAAXMA010000065
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXMA]
3153
3079
-
Arg
ACG
[ENA]
¡û
>W2010579003
JAAXMB010000002
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXMB]
14190
14116
-
Arg
ACG
[ENA]
¡û
Identical group No.445902 (2 seq.)
>C181193293
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
1354544
1354620
+
Arg
ACG
-
¡û
>W2110093621
CAJCIB010000141
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [CAJCIB]
34321
34245
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK