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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Vulcanimicrobiota
Anticodon = CAA
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.181519 (25 seq.)
>W131231920
AUIV01000014
Gammaproteobacteria
Thermomonas fusca DSM 15424 [AUIV]
8775
8860
+
Leu
CAA
[ENA]
¡û
>WENV180017616
FSXK01001217
[FSXK] metagenome; soil
638
723
+
Leu
CAA
[ENA]
¡û
>WENV180019166
FTBI01001085
[FTBI] metagenome; soil
9873
9958
+
Leu
CAA
[ENA]
¡û
>WENV180036023
FTLB01141045
[FTLB] metagenome; soil
152
67
-
Leu
CAA
[ENA]
¡û
>WENV183698128
OUNK011150754
[OUNK] metagenome; soil
3038
3123
+
Leu
CAA
[ENA]
¡û
>C191138595
CP035300
Gammaproteobacteria
Dyella sp. M7H15-1 [CP035300]
1706698
1706783
+
Leu
CAA
-
¡û
>W1810762618
QQAH01000011
Gammaproteobacteria
Dyella tabacisoli L4-6 [QQAH]
18001
17916
-
Leu
CAA
[ENA]
¡û
>W1810785126
QRBF01000001
Gammaproteobacteria
Dyella psychrodurans 4MSK11 [QRBF]
1027940
1028025
+
Leu
CAA
[ENA]
¡û
>W2011404632
RCWW01000001
Gammaproteobacteria
Dyella sp. YR388 [RCWW]
2233413
2233498
+
Leu
CAA
[ENA]
¡û
>W2011509764
RYZR01000003
Gammaproteobacteria
Dyella sp. DHOA06 [RYZR]
659388
659473
+
Leu
CAA
[ENA]
¡û
>W2011613388
SJTG01000002
Gammaproteobacteria
Dyella soli KACC 12747 [SJTG]
391937
391852
-
Leu
CAA
[ENA]
¡û
>W2011679785
SROY01000002
Gammaproteobacteria
Thermomonas fusca SHC 3-19 [SROY]
458946
458861
-
Leu
CAA
[ENA]
¡û
>W2110027232
BMIZ01000001
Gammaproteobacteria
Dyella caseinilytica CGMCC 1.15434 [BMIZ]
2178608
2178523
-
Leu
CAA
[ENA]
¡û
>W2110094434
CAJCJD010000083
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [CAJCJD]
4065
4150
+
Leu
CAA
[ENA]
¡û
>W2110295364
JACZZA010000007
Gammaproteobacteria
Dyella sp. 7MK23 [JACZZA]
228737
228822
+
Leu
CAA
[ENA]
¡û
>W2110325922
JADIKC010000001
Gammaproteobacteria
Dyella kyungheensis THG-B117 [JADIKC]
550182
550097
-
Leu
CAA
[ENA]
¡û
>W2110325975
JADIKE010000035
Gammaproteobacteria
Dyella flava DHOC52 [JADIKE]
296387
296472
+
Leu
CAA
[ENA]
¡û
>W2110326043
JADIKF010000039
Gammaproteobacteria
Dyella mobilis DHON07 [JADIKF]
816930
816845
-
Leu
CAA
[ENA]
¡û
>W2110425474
JAELTT010000017
Gammaproteobacteria
Dyella sp. ASV21 [JAELTT]
72523
72438
-
Leu
CAA
[ENA]
¡û
>C211186194
CP064030
Gammaproteobacteria
Dyella caseinilytica DHOB09 [CP064030]
1523152
1523067
-
Leu
CAA
-
¡û
>W2310024404
BSNQ01000003
Gammaproteobacteria
Dyella lipolytica NBRC 111473 [BSNQ]
228603
228518
-
Leu
CAA
[ENA]
¡û
>W2310024438
BSNR01000001
Gammaproteobacteria
Dyella flava NBRC 111979 [BSNR]
19417
19332
-
Leu
CAA
[ENA]
¡û
>W2310024714
BSOB01000061
Gammaproteobacteria
Dyella acidisoli NBRC 111980 [BSOB]
67957
67872
-
Leu
CAA
[ENA]
¡û
>W2310024750
BSOC01000002
Gammaproteobacteria
Dyella mobilis NBRC 111475 [BSOC]
816947
816862
-
Leu
CAA
[ENA]
¡û
>W1511305048
JPLA01000003
Gammaproteobacteria
Dyella japonica DSM 16301 [JPLA]
55460
55375
-
Leu
CAA
[ENA]
¡û
Identical group No.223779 (1 seq.)
>W2010578505
JAAXCW010000008
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXCW]
98898
98979
+
Leu
CAA
[ENA]
¡û
Identical group No.241509 (1 seq.)
>W2010578907
JAAXLV010000068
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXLV]
4950
4866
-
Leu
CAA
[ENA]
¡û
Identical group No.241510 (1 seq.)
>W2010578959
JAAXLY010000143
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXLY]
2090
2174
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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