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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Vulcanimicrobiota
Anticodon = CCA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.574058 (5 seq.)
>WENV183092595
OLLG01000282
[OLLG] soil metagenome; soil
11333
11258
-
Trp
CCA
[ENA]
¡û
>W2010578518
JAAXCW010000010
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXCW]
80945
80870
-
Trp
CCA
[ENA]
¡û
>W2010578901
JAAXLV010000019
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXLV]
511
436
-
Trp
CCA
[ENA]
¡û
>W2010579020
JAAXMB010000044
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXMB]
4822
4897
+
Trp
CCA
[ENA]
¡û
>W2110094222
CAJCIV010000082
Acidobacteriota
Acidobacteriaceae bacterium [CAJCIV]
7052
7127
+
Trp
CCA
[ENA]
¡û
Identical group No.663314 (1 seq.)
>W2110093624
CAJCIB010000150
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [CAJCIB]
1657
1732
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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