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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Vulcanimicrobiota
Anticodon = CGG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.389509 (6 seq.)
>WENV180017621
FSXK01001532
[FSXK] metagenome; soil
614
690
+
Pro
CGG
[ENA]
¡û
>WENV183697557
OUNK010001196
[OUNK] metagenome; soil
2331
2407
+
Pro
CGG
[ENA]
¡û
>W2011509754
RYZR01000002
Gammaproteobacteria
Dyella sp. DHOA06 [RYZR]
292140
292064
-
Pro
CGG
[ENA]
¡û
>W2110094447
CAJCJD010000147
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [CAJCJD]
8785
8861
+
Pro
CGG
[ENA]
¡û
>W2110326046
JADIKF010000040
Gammaproteobacteria
Dyella mobilis DHON07 [JADIKF]
358931
359007
+
Pro
CGG
[ENA]
¡û
>W2310024758
BSOC01000005
Gammaproteobacteria
Dyella mobilis NBRC 111475 [BSOC]
6611
6535
-
Pro
CGG
[ENA]
¡û
Identical group No.398584 (4 seq.)
>W2010578482
JAAXCW010000001
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXCW]
122021
121948
-
Pro
CGG
[ENA]
¡û
>W2010578926
JAAXLX010000027
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXLX]
19711
19638
-
Pro
CGG
[ENA]
¡û
>W2010578969
JAAXLZ010000013
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXLZ]
5737
5664
-
Pro
CGG
[ENA]
¡û
>W2010578985
JAAXMA010000025
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXMA]
3757
3830
+
Pro
CGG
[ENA]
¡û
Identical group No.443997 (2 seq.)
>C181193325
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
2114023
2113947
-
Pro
CGG
-
¡û
>W2130007095
CAJCIB010000240
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [CAJCIB]
20297
20221
-
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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