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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Vulcanimicrobiota
Anticodon = CTC
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.324662 (15 seq.)
>WENV180017308
FSWS01000068
[FSWS] metagenome; soil
7725
7801
+
Glu
CTC
[ENA]
¡û
>WENV183697571
OUNK010002518
[OUNK] metagenome; soil
4049
3973
-
Glu
CTC
[ENA]
¡û
>C181193314
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
6493211
6493135
-
Glu
CTC
-
¡û
>W2010672909
JACCCU010000001
Acidobacteriota
Edaphobacter lichenicola M8UP22 [JACCCU]
2090506
2090430
-
Glu
CTC
[ENA]
¡û
>W2010672949
JACCCV010000001
Acidobacteriota
Edaphobacter lichenicola M8UP30 [JACCCV]
2690504
2690580
+
Glu
CTC
[ENA]
¡û
>W2010698038
JACHDY010000001
Acidobacteriota
Edaphobacter lichenicola M8UP27 [JACHDY]
671704
671628
-
Glu
CTC
[ENA]
¡û
>W2010698109
JACHDZ010000007
Acidobacteriota
Edaphobacter lichenicola M8US30 [JACHDZ]
47500
47576
+
Glu
CTC
[ENA]
¡û
>W2010698148
JACHEA010000001
Acidobacteriota
Edaphobacter lichenicola M8UP15 [JACHEA]
1338287
1338211
-
Glu
CTC
[ENA]
¡û
>W2010698184
JACHEB010000006
Acidobacteriota
Edaphobacter lichenicola X5P2 [JACHEB]
312703
312627
-
Glu
CTC
[ENA]
¡û
>W2010781175
LMUD01000040
Acidobacteriota
Granulicella sp. S190 [LMUD]
205663
205739
+
Glu
CTC
[ENA]
¡û
>W2011373411
RBIF01000001
Acidobacteriota
Edaphobacter dinghuensis EB95 [RBIF]
542723
542647
-
Glu
CTC
[ENA]
¡û
>W2011489946
RSDW01000001
Acidobacteriota
Edaphobacter aggregans EB153 [RSDW]
300692
300616
-
Glu
CTC
[ENA]
¡û
>W2011580184
SHKW01000001
Acidobacteriota
Edaphobacter modestus DSM 18101 [SHKW]
5829794
5829870
+
Glu
CTC
[ENA]
¡û
>W2110093604
CAJCIB010000053
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [CAJCIB]
3631
3707
+
Glu
CTC
[ENA]
¡û
>C231131696
CP073696
Acidobacteriota
Edaphobacter lichenicola DSM 104462 [CP073696]
1813656
1813580
-
Glu
CTC
-
¡û
Identical group No.569272 (15 seq.)
>WENV180017595
FSXK01000490
[FSXK] metagenome; soil
27329
27404
+
Glu
CTC
[ENA]
¡û
>WENV183698123
OUNK011150727
[OUNK] metagenome; soil
977
1052
+
Glu
CTC
[ENA]
¡û
>C191138634
CP035300
Gammaproteobacteria
Dyella sp. M7H15-1 [CP035300]
450256
450181
-
Glu
CTC
-
¡û
>W1810785113
QRBE01000021
Gammaproteobacteria
Dyella monticola 4G-K06 [QRBE]
22469
22544
+
Glu
CTC
[ENA]
¡û
>W2110027233
BMIZ01000001
Gammaproteobacteria
Dyella caseinilytica CGMCC 1.15434 [BMIZ]
2115034
2114959
-
Glu
CTC
[ENA]
¡û
>W2110027257
BMJA01000001
Gammaproteobacteria
Dyella nitratireducens CGMCC 1.15439 [BMJA]
398661
398736
+
Glu
CTC
[ENA]
¡û
>W2110094448
CAJCJD010000167
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [CAJCJD]
3371
3296
-
Glu
CTC
[ENA]
¡û
>W2110295383
JACZZA010000015
Gammaproteobacteria
Dyella sp. 7MK23 [JACZZA]
72030
71955
-
Glu
CTC
[ENA]
¡û
>W2110326044
JADIKF010000039
Gammaproteobacteria
Dyella mobilis DHON07 [JADIKF]
760381
760306
-
Glu
CTC
[ENA]
¡û
>C211186195
CP064030
Gammaproteobacteria
Dyella caseinilytica DHOB09 [CP064030]
1459578
1459503
-
Glu
CTC
-
¡û
>W2310024370
BSNP01000007
Gammaproteobacteria
Dyella nitratireducens NBRC 111472 [BSNP]
2061307
2061232
-
Glu
CTC
[ENA]
¡û
>W2310024405
BSNQ01000003
Gammaproteobacteria
Dyella lipolytica NBRC 111473 [BSNQ]
192527
192452
-
Glu
CTC
[ENA]
¡û
>W2310024648
BSOA01000020
Gammaproteobacteria
Dyella flagellata NBRC 111981 [BSOA]
16905
16980
+
Glu
CTC
[ENA]
¡û
>W2310024715
BSOB01000061
Gammaproteobacteria
Dyella acidisoli NBRC 111980 [BSOB]
5659
5584
-
Glu
CTC
[ENA]
¡û
>W2310024751
BSOC01000002
Gammaproteobacteria
Dyella mobilis NBRC 111475 [BSOC]
760398
760323
-
Glu
CTC
[ENA]
¡û
Identical group No.574059 (6 seq.)
>WENV180032696
FTKC01861879
[FTKC] metagenome; soil
17
92
+
Glu
CTC
[ENA]
¡û
>WENV183092599
OLLG01000295
[OLLG] soil metagenome; soil
4599
4671
+
Glu
CTC
[ENA]
¡û
>WENV170649047
JRHI01005490
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
3457
3382
-
Glu
CTC
[ENA]
¡û
>W2010578486
JAAXCW010000002
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXCW]
309410
309484
+
Glu
CTC
[ENA]
¡û
>W2010578910
JAAXLV010000090
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXLV]
5043
5118
+
Glu
CTC
[ENA]
¡û
>W2010578964
JAAXLZ010000003
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXLZ]
34226
34301
+
Glu
CTC
[ENA]
¡û
Identical group No.610860 (1 seq.)
>W2010578480
JAAXCW010000001
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXCW]
73626
73698
+
Glu
CTC
[ENA]
¡û
Identical group No.610872 (1 seq.)
>W2010578919
JAAXLW010000040
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXLW]
5762
5834
+
Glu
CTC
[ENA]
¡û
Identical group No.702591 (2 seq.)
>W2010578958
JAAXLY010000142
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXLY]
3492
3567
+
Glu
CTC
[ENA]
¡û
>W2010578998
JAAXMA010000076
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXMA]
6475
6400
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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