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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Vulcanimicrobiota
Anticodon = CTG
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.610871 (1 seq.)
>W2010578918
JAAXLW010000040
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXLW]
5686
5759
+
Gln
CTG
[ENA]
¡û
Identical group No.876050 (86 seq.)
>W1711386634
MEFP01000003
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-320 [MEFP]
52775
52702
-
Gln
CTG
[ENA]
¡û
>W1711387528
MEGS01000029
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-25 [MEGS]
64430
64503
+
Gln
CTG
[ENA]
¡û
>W1711506720
MKWQ01000020
Gammaproteobacteria
Xanthomonadales bacterium 69-70 [MKWQ]
52771
52698
-
Gln
CTG
[ENA]
¡û
>WENV180017440
FSXA01000373
[FSXA] metagenome; soil
2617
2544
-
Gln
CTG
[ENA]
¡û
>WENV180019174
FTBI01001188
[FTBI] metagenome; soil
3508
3435
-
Gln
CTG
[ENA]
¡û
>WENV180099540
NMRC01015386
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
1746
1819
+
Gln
CTG
[ENA]
¡û
>WENV183698118
OUNK011150667
[OUNK] metagenome; soil
12267
12194
-
Gln
CTG
[ENA]
¡û
>WENV170650854
JRYE01033649
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
113
186
+
Gln
CTG
[ENA]
¡û
>C191185997
CP041046
Gammaproteobacteria
Luteibacter pinisoli MAH-14 [CP041046]
551769
551842
+
Gln
CTG
-
¡û
>W141564940
JIBD01000015
Gammaproteobacteria
Dyella japonica UNC79MFTsu3.2 [JIBD]
516050
515977
-
Gln
CTG
[ENA]
¡û
>W1910896572
NFZS01000001
Gammaproteobacteria
Dyella jiangningensis FCAV SCS01 [NFZS]
595775
595848
+
Gln
CTG
[ENA]
¡û
>W1911199789
NRDP01000004
Gammaproteobacteria
Dyella sp. AD56 [NRDP]
12609
12536
-
Gln
CTG
[ENA]
¡û
>W1810485562
QAVX01000001
Gammaproteobacteria
Dyella sp. C11 [QAVX]
324249
324322
+
Gln
CTG
[ENA]
¡û
>W1810597236
QGHC01000018
Gammaproteobacteria
Fulvimonas soli DSM 14263 [QGHC]
5091
5164
+
Gln
CTG
[ENA]
¡û
>W1810628339
QICJ01000003
Gammaproteobacteria
Dyella sp. AtDHG13 [QICJ]
139150
139223
+
Gln
CTG
[ENA]
¡û
>W1810629415
QIRF01000002
Gammaproteobacteria
Dyella sp. C9 [QIRF]
449040
448967
-
Gln
CTG
[ENA]
¡û
>W1810762607
QQAH01000008
Gammaproteobacteria
Dyella tabacisoli L4-6 [QQAH]
18281
18354
+
Gln
CTG
[ENA]
¡û
>W1810783257
QQSY01000002
Gammaproteobacteria
Dyella solisilvae DHG54 [QQSY]
193604
193531
-
Gln
CTG
[ENA]
¡û
>W1810785083
QRBE01000003
Gammaproteobacteria
Dyella monticola 4G-K06 [QRBE]
194740
194813
+
Gln
CTG
[ENA]
¡û
>W1810785151
QRBF01000005
Gammaproteobacteria
Dyella psychrodurans 4MSK11 [QRBF]
289222
289149
-
Gln
CTG
[ENA]
¡û
>C151023735
CP007444
Gammaproteobacteria
Dyella jiangningensis SBZ3-12 [CP007444]
5022578
5022651
+
Gln
CTG
[Ensembl]
¡û
>C151039071
CP008884
Gammaproteobacteria
Dyella japonica A8 [CP008884]
1369871
1369944
+
Gln
CTG
[Ensembl]
¡û
>W2010534029
JAAOYS010000001
Gammaproteobacteria
Dyella sp. SG562 [JAAOYS]
679883
679810
-
Gln
CTG
[ENA]
¡û
>W2010534309
JAAOYX010000003
Gammaproteobacteria
Lutibacter sp. SG786 [JAAOYX]
295625
295698
+
Gln
CTG
[ENA]
¡û
>W2010537188
JAAQQR010000002
Gammaproteobacteria
Luteibacter jiangsuensis CGMCC 1.10133 [JAAQQR]
579645
579572
-
Gln
CTG
[ENA]
¡û
>W2010537791
JAAQTL010000001
Gammaproteobacteria
Luteibacter yeojuensis DSM 17673 [JAAQTL]
2542315
2542242
-
Gln
CTG
[ENA]
¡û
>W2010543784
JAARLZ010000010
Gammaproteobacteria
Luteibacter anthropi CCUG 25036 [JAARLZ]
73040
72967
-
Gln
CTG
[ENA]
¡û
>W2010910247
MSZV01000003
Gammaproteobacteria
Fulvimonas soli LMG 19981 [MSZV]
46615
46542
-
Gln
CTG
[ENA]
¡û
>W2010957066
NFZS01000001
Gammaproteobacteria
Dyella jiangningensis FCAV SCS01 [NFZS]
595775
595848
+
Gln
CTG
[ENA]
¡û
>W2011048005
NRDP01000004
Gammaproteobacteria
Dyella sp. AD56 [NRDP]
12609
12536
-
Gln
CTG
[ENA]
¡û
>W2011404661
RCWW01000002
Gammaproteobacteria
Dyella sp. YR388 [RCWW]
584816
584743
-
Gln
CTG
[ENA]
¡û
>W2011509574
RYYV01000009
Gammaproteobacteria
Dyella sp. 4M-K27 [RYYV]
91395
91322
-
Gln
CTG
[ENA]
¡û
>W2011509781
RYZR01000005
Gammaproteobacteria
Dyella sp. DHOA06 [RYZR]
245186
245113
-
Gln
CTG
[ENA]
¡û
>W2011529203
SAYT01000005
Gammaproteobacteria
Dyella sp. DHC06 [SAYT]
626326
626253
-
Gln
CTG
[ENA]
¡û
>W2011603269
SIZZ01000002
Gammaproteobacteria
Dyella terrae KACC 12748 [SIZZ]
516889
516962
+
Gln
CTG
[ENA]
¡û
>W2011613396
SJTG01000004
Gammaproteobacteria
Dyella soli KACC 12747 [SJTG]
540849
540776
-
Gln
CTG
[ENA]
¡û
>W2011613404
SJTG01000005
Gammaproteobacteria
Dyella soli KACC 12747 [SJTG]
543592
543519
-
Gln
CTG
[ENA]
¡û
>W2011651754
SNZH01000015
Gammaproteobacteria
Tahibacter aquaticus DSM 21667 [SNZH]
13348
13421
+
Gln
CTG
[ENA]
¡û
>W2012047716
VIVY01000009
Gammaproteobacteria
Luteibacter yeojuensis 583 [VIVY]
95777
95850
+
Gln
CTG
[ENA]
¡û
>W2110011752
BCPR01000011
Gammaproteobacteria
Dyella sp. EPa41 [BCPR]
57641
57568
-
Gln
CTG
[ENA]
¡û
>W2110027238
BMIZ01000002
Gammaproteobacteria
Dyella caseinilytica CGMCC 1.15434 [BMIZ]
606338
606265
-
Gln
CTG
[ENA]
¡û
>W2110027262
BMJA01000001
Gammaproteobacteria
Dyella nitratireducens CGMCC 1.15439 [BMJA]
1145466
1145393
-
Gln
CTG
[ENA]
¡û
>W2110094430
CAJCJD010000032
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [CAJCJD]
37514
37441
-
Gln
CTG
[ENA]
¡û
>W2110295344
JACZZA010000001
Gammaproteobacteria
Dyella sp. 7MK23 [JACZZA]
244116
244043
-
Gln
CTG
[ENA]
¡û
>W2110325955
JADIKC010000007
Gammaproteobacteria
Dyella kyungheensis THG-B117 [JADIKC]
558228
558155
-
Gln
CTG
[ENA]
¡û
>W2110325991
JADIKE010000037
Gammaproteobacteria
Dyella flava DHOC52 [JADIKE]
421898
421825
-
Gln
CTG
[ENA]
¡û
>W2110326021
JADIKF010000039
Gammaproteobacteria
Dyella mobilis DHON07 [JADIKF]
193117
193190
+
Gln
CTG
[ENA]
¡û
>W2110403121
JADZLP010000002
Gammaproteobacteria
Rhodanobacteraceae bacterium NC3-4-326 [JADZLP]
1093487
1093414
-
Gln
CTG
[ENA]
¡û
>W2110403154
JADZLQ010000001
Gammaproteobacteria
Rhodanobacteraceae bacterium NC2-4-308 [JADZLQ]
1807716
1807643
-
Gln
CTG
[ENA]
¡û
>W2110403212
JADZLR010000002
Gammaproteobacteria
Rhodanobacteraceae bacterium NA3-4-109 [JADZLR]
393346
393419
+
Gln
CTG
[ENA]
¡û
>W2110425299
JAELTQ010000066
Gammaproteobacteria
Dyella sp. ASV24 [JAELTQ]
22529
22456
-
Gln
CTG
[ENA]
¡û
>W2110425495
JAELTT010000062
Gammaproteobacteria
Dyella sp. ASV21 [JAELTT]
8051
8124
+
Gln
CTG
[ENA]
¡û
>W2110557770
JAGJRS010000013
Gammaproteobacteria
Frateuria sp. MAH-13 [JAGJRS]
216893
216820
-
Gln
CTG
[ENA]
¡û
>W2110599119
JAHEVH010000001
Gammaproteobacteria
Dyella sp. LX-1 [JAHEVH]
447971
447898
-
Gln
CTG
[ENA]
¡û
>W2110600222
JAHFVJ010000003
Gammaproteobacteria
Dyella sp. LX-66 [JAHFVJ]
448109
448036
-
Gln
CTG
[ENA]
¡û
>C211133247
CP060412
Gammaproteobacteria
Dyella sp. G9 [CP060412]
2837052
2837125
+
Gln
CTG
-
¡û
>C211186177
CP064030
Gammaproteobacteria
Dyella caseinilytica DHOB09 [CP064030]
3601618
3601545
-
Gln
CTG
-
¡û
>C211346863
CP076546
Bacillota
Bacillus sp. NP157 [CP076546]
3328889
3328816
-
Gln
CTG
-
¡û
>C231095976
CP063231
Gammaproteobacteria
Luteibacter sp. EIF3 [CP063231]
3806965
3806892
-
Gln
CTG
-
¡û
>C231155513
CP077072
Gammaproteobacteria
Luteibacter anthropi SM7.4 [CP077072]
2118338
2118411
+
Gln
CTG
-
¡û
>C231252109
CP088251
Gammaproteobacteria
Frateuria sp. 5GH9-34 [CP088251]
300450
300523
+
Gln
CTG
-
¡û
>C231252157
CP088252
Gammaproteobacteria
Frateuria sp. 5GH9-11 [CP088252]
186699
186772
+
Gln
CTG
-
¡û
>C231261988
CP089414
Gammaproteobacteria
Dyella terrae Ely Copper Mine [CP089414]
4086474
4086547
+
Gln
CTG
-
¡û
>C231362831
CP095740
Gammaproteobacteria
Luteibacter sp. 321 [CP095740]
4199212
4199139
-
Gln
CTG
-
¡û
>C231362860
CP095741
Gammaproteobacteria
Luteibacter sp. 335 [CP095741]
627950
628023
+
Gln
CTG
-
¡û
>C231362911
CP095742
Gammaproteobacteria
Luteibacter sp. 353 [CP095742]
548728
548801
+
Gln
CTG
-
¡û
>C241321610
CP134867
Gammaproteobacteria
Dyella sp. BiH032 [CP134867]
1001959
1002032
+
Gln
CTG
-
¡û
>W2310024345
BSNP01000007
Gammaproteobacteria
Dyella nitratireducens NBRC 111472 [BSNP]
1314168
1314241
+
Gln
CTG
[ENA]
¡û
>W2310024413
BSNQ01000009
Gammaproteobacteria
Dyella lipolytica NBRC 111473 [BSNQ]
330511
330438
-
Gln
CTG
[ENA]
¡û
>W2310024441
BSNR01000004
Gammaproteobacteria
Dyella flava NBRC 111979 [BSNR]
119019
119092
+
Gln
CTG
[ENA]
¡û
>W2310024664
BSOA01000049
Gammaproteobacteria
Dyella flagellata NBRC 111981 [BSOA]
178374
178301
-
Gln
CTG
[ENA]
¡û
>W2310024673
BSOB01000010
Gammaproteobacteria
Dyella acidisoli NBRC 111980 [BSOB]
428208
428135
-
Gln
CTG
[ENA]
¡û
>W2310024728
BSOC01000002
Gammaproteobacteria
Dyella mobilis NBRC 111475 [BSOC]
193134
193207
+
Gln
CTG
[ENA]
¡û
>W1511305072
JPLA01000042
Gammaproteobacteria
Dyella japonica DSM 16301 [JPLA]
18194
18121
-
Gln
CTG
[ENA]
¡û
>W1511547572
JZRB01000013
Gammaproteobacteria
Luteibacter yeojuensis SU11 [JZRB]
20037
19964
-
Gln
CTG
[ENA]
¡û
>W1511686298
LFQR01000081
Gammaproteobacteria
Frateuria defendens Hyalesthes Obsoletus HyOG [LFQR]
3142
3069
-
Gln
CTG
[ENA]
¡û
>W121113873
ALOY01000094
Gammaproteobacteria
Dyella japonica A8 [ALOY]
2961
3034
+
Gln
CTG
[ENA]
¡û
>W1710519786
FNFA01000001
Gammaproteobacteria
Dyella jiangningensis [FNFA]
504771
504698
-
Gln
CTG
[ENA]
¡û
>W1710541146
FNYC01000002
Gammaproteobacteria
Frateuria terrea [FNYC]
76738
76665
-
Gln
CTG
[ENA]
¡û
>W1710545825
FOBU01000004
Gammaproteobacteria
Luteibacter sp. UNCMF331Sha3.1 [FOBU]
67908
67981
+
Gln
CTG
[ENA]
¡û
>W1710548720
FODZ01000005
Gammaproteobacteria
Luteibacter sp. UNC138MFCol5.1 [FODZ]
92290
92217
-
Gln
CTG
[ENA]
¡û
>W1710555224
FOJE01000003
Gammaproteobacteria
Luteibacter sp. 329MFSha [FOJE]
97845
97772
-
Gln
CTG
[ENA]
¡û
>W1710560335
FONH01000010
Gammaproteobacteria
Dyella marensis [FONH]
59380
59453
+
Gln
CTG
[ENA]
¡û
>W1710573380
FOXL01000003
Gammaproteobacteria
Frateuria terrea [FOXL]
76738
76665
-
Gln
CTG
[ENA]
¡û
>W1710575645
FOZI01000001
Gammaproteobacteria
Dyella sp. OK004 [FOZI]
643532
643459
-
Gln
CTG
[ENA]
¡û
>W1710579687
FPIS01000004
Gammaproteobacteria
Luteibacter sp. UNCMF366Tsu5.1 [FPIS]
161060
160987
-
Gln
CTG
[ENA]
¡û
Identical group No.899985 (1 seq.)
>W2010578479
JAAXCW010000001
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXCW]
73552
73623
+
Gln
CTG
[ENA]
¡û
Identical group No.899986 (1 seq.)
>W2010578485
JAAXCW010000002
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXCW]
309337
309408
+
Gln
CTG
[ENA]
¡û
Identical group No.915668 (2 seq.)
>C181193291
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
931631
931704
+
Gln
CTG
-
¡û
>W2110093616
CAJCIB010000102
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [CAJCIB]
19525
19598
+
Gln
CTG
[ENA]
¡û
Identical group No.926611 (2 seq.)
>W2010578909
JAAXLV010000090
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXLV]
4969
5040
+
Gln
CTG
[ENA]
¡û
>W2010578963
JAAXLZ010000003
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXLZ]
34152
34223
+
Gln
CTG
[ENA]
¡û
Identical group No.926612 (2 seq.)
>W2010578957
JAAXLY010000142
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXLY]
3418
3489
+
Gln
CTG
[ENA]
¡û
>W2010578997
JAAXMA010000076
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXMA]
6549
6478
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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