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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Vulcanimicrobiota
Anticodon = GAC
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.324668 (26 seq.)
>W131179156
ARMD01000023
Acidobacteriota
Acidobacteriaceae bacterium KBS 83 [ARMD]
331088
331012
-
Val
GAC
[ENA]
¡û
>W131179174
ARME01000006
Acidobacteriota
Acidobacteriaceae bacterium KBS 89 [ARME]
997060
997136
+
Val
GAC
[ENA]
¡û
>W131216787
ATWD01000001
Acidobacteriota
Acidobacteriaceae bacterium TAA 166 TAA166 [ATWD]
1827853
1827929
+
Val
GAC
[ENA]
¡û
>W1711502566
MKSV01000002
Acidobacteriota
Acidobacteriales bacterium 59-55 [MKSV]
15829
15753
-
Val
GAC
[ENA]
¡û
>WENV181144634
OEHO01051742
[OEHO] metagenome; unknown
81
157
+
Val
GAC
[ENA]
¡û
>WENV181191075
OEPS010020793
[OEPS] soil metagenome; soil
555
479
-
Val
GAC
[ENA]
¡û
>WENV183093052
OLLR01000076
[OLLR] soil metagenome; soil
23854
23930
+
Val
GAC
[ENA]
¡û
>WENV183093189
OLLV01000129
[OLLV] soil metagenome; soil
113479
113403
-
Val
GAC
[ENA]
¡û
>WENV170008430
AOMP01004667
[AOMP] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
451
375
-
Val
GAC
[ENA]
¡û
>WENV170008604
AOMQ01006068
[AOMQ] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
224
300
+
Val
GAC
[ENA]
¡û
>WENV170564525
CZKR01000012
[CZKR] soil metagenome genome assembly CiPEHR-AK-2010-FBin.7, contig:; soil
28730
28806
+
Val
GAC
[ENA]
¡û
>WENV170564766
CZKY01000124
[CZKY] soil metagenome isolate CiPEHR-AK-2010_C2 genome assembly, contig:; soil
614
690
+
Val
GAC
[ENA]
¡û
>C181193313
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
6903594
6903670
+
Val
GAC
-
¡û
>W2010672963
JACCCV010000001
Acidobacteriota
Edaphobacter lichenicola M8UP30 [JACCCV]
758563
758487
-
Val
GAC
[ENA]
¡û
>W2010698087
JACHDZ010000001
Acidobacteriota
Edaphobacter lichenicola M8US30 [JACHDZ]
21932
21856
-
Val
GAC
[ENA]
¡û
>W2010698131
JACHEA010000001
Acidobacteriota
Edaphobacter lichenicola M8UP15 [JACHEA]
3175214
3175290
+
Val
GAC
[ENA]
¡û
>W2010698552
JACHEK010000001
Acidobacteriota
Silvibacterium bohemicum DSM 103733 [JACHEK]
732138
732062
-
Val
GAC
[ENA]
¡û
>W2010781575
LMUM01000026
Acidobacteriota
Acidobacterium sp. S8 [LMUM]
75808
75732
-
Val
GAC
[ENA]
¡û
>W2010781862
LMUS01000006
Acidobacteriota
Granulicella sp. L56 [LMUS]
1359071
1358995
-
Val
GAC
[ENA]
¡û
>W2110027315
BMJB01000001
Acidobacteriota
Edaphobacter acidisoli CGMCC 1.15447 [BMJB]
3154809
3154885
+
Val
GAC
[ENA]
¡û
>W2110093599
CAJCIB010000021
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [CAJCIB]
25469
25545
+
Val
GAC
[ENA]
¡û
>C211132792
CP060394
Acidobacteriota
Acidobacterium sp. 4Y35 [CP060394]
3840703
3840779
+
Val
GAC
-
¡û
>C231131682
CP073696
Acidobacteriota
Edaphobacter lichenicola DSM 104462 [CP073696]
4835084
4835008
-
Val
GAC
-
¡û
>W1511591099
LBHJ01000001
Acidobacteriota
Silvibacterium bohemicum S15 [LBHJ]
732119
732043
-
Val
GAC
[ENA]
¡û
>C121011815
CP003379
Acidobacteriota
Terriglobus roseus DSM 18391 [CP003379]
4932311
4932235
-
Val
GAC
[Ensembl]
¡û
>W1710534868
FNSD01000001
Acidobacteriota
Terriglobus roseus [FNSD]
2979705
2979781
+
Val
GAC
[ENA]
¡û
Identical group No.481156 (2 seq.)
>W2010578943
JAAXLY010000060
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXLY]
2633
2706
+
Val
GAC
[ENA]
¡û
>W2010578981
JAAXMA010000005
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXMA]
1295
1368
+
Val
GAC
[ENA]
¡û
Identical group No.732370 (40 seq.)
>WENV180017610
FSXK01000967
[FSXK] metagenome; soil
1236
1310
+
Val
GAC
[ENA]
¡û
>WENV180099413
NMRC01002774
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
279
205
-
Val
GAC
[ENA]
¡û
>WENV183698117
OUNK011150660
[OUNK] metagenome; soil
8252
8178
-
Val
GAC
[ENA]
¡û
>WENV170004259
AGTN01619875
[AGTN] bioreactor metagenome; poplar biomass
2233
2307
+
Val
GAC
[ENA]
¡û
>C191003496
AP018560
Gammaproteobacteria
Aerosticca soli Dysh456 [AP018560]
1814844
1814770
-
Val
GAC
-
¡û
>C191138610
CP035300
Gammaproteobacteria
Dyella sp. M7H15-1 [CP035300]
2163443
2163369
-
Val
GAC
-
¡û
>W141564956
JIBD01000019
Gammaproteobacteria
Dyella japonica UNC79MFTsu3.2 [JIBD]
5793
5867
+
Val
GAC
[ENA]
¡û
>W1910797090
MSPY01000008
Gammaproteobacteria
Oleiagrimonas sp. MCCC 1A03011 [MSPY]
51567
51493
-
Val
GAC
[ENA]
¡û
>W1810597216
QGHC01000003
Gammaproteobacteria
Fulvimonas soli DSM 14263 [QGHC]
339149
339075
-
Val
GAC
[ENA]
¡û
>W1810785074
QRBE01000001
Gammaproteobacteria
Dyella monticola 4G-K06 [QRBE]
394952
395026
+
Val
GAC
[ENA]
¡û
>W1810785146
QRBF01000002
Gammaproteobacteria
Dyella psychrodurans 4MSK11 [QRBF]
408288
408362
+
Val
GAC
[ENA]
¡û
>W2010489471
JAAIYP010000025
Alphaproteobacteria
Magnetospirillum aberrantis SpK [JAAIYP]
8839
8913
+
Val
GAC
[ENA]
¡û
>W2010534033
JAAOYS010000001
Gammaproteobacteria
Dyella sp. SG562 [JAAOYS]
148890
148816
-
Val
GAC
[ENA]
¡û
>W2010671844
JACCCA010000002
Gammaproteobacteria
Rhodanobacter sp. K2T2 [JACCCA]
289485
289411
-
Val
GAC
[ENA]
¡û
>W2010696041
JACHCM010000010
Gammaproteobacteria
Rhodanobacter sp. ANJX3 [JACHCM]
18090
18016
-
Val
GAC
[ENA]
¡û
>W2010781998
LMUV01000011
Gammaproteobacteria
Rhodanobacter sp. L36 [LMUV]
1584587
1584661
+
Val
GAC
[ENA]
¡û
>W2010904803
MSPY01000008
Gammaproteobacteria
Oleiagrimonas sp. MCCC 1A03011 [MSPY]
51567
51493
-
Val
GAC
[ENA]
¡û
>W2010910249
MSZV01000005
Gammaproteobacteria
Fulvimonas soli LMG 19981 [MSZV]
89559
89485
-
Val
GAC
[ENA]
¡û
>W2011509576
RYYV01000010
Gammaproteobacteria
Dyella sp. 4M-K27 [RYYV]
43327
43401
+
Val
GAC
[ENA]
¡û
>W2011509792
RYZR01000007
Gammaproteobacteria
Dyella sp. DHOA06 [RYZR]
612398
612472
+
Val
GAC
[ENA]
¡û
>W2110027209
BMIZ01000001
Gammaproteobacteria
Dyella caseinilytica CGMCC 1.15434 [BMIZ]
1653859
1653933
+
Val
GAC
[ENA]
¡û
>W2110027283
BMJA01000002
Gammaproteobacteria
Dyella nitratireducens CGMCC 1.15439 [BMJA]
357575
357649
+
Val
GAC
[ENA]
¡û
>W2110094423
CAJCJD010000010
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [CAJCJD]
29135
29061
-
Val
GAC
[ENA]
¡û
>W2110094453
CAJCJD010000227
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [CAJCJD]
1776
1702
-
Val
GAC
[ENA]
¡û
>W2110295353
JACZZA010000004
Gammaproteobacteria
Dyella sp. 7MK23 [JACZZA]
238365
238439
+
Val
GAC
[ENA]
¡û
>W2110325992
JADIKE010000037
Gammaproteobacteria
Dyella flava DHOC52 [JADIKE]
238917
238843
-
Val
GAC
[ENA]
¡û
>W2110326051
JADIKF010000040
Gammaproteobacteria
Dyella mobilis DHON07 [JADIKF]
1134365
1134291
-
Val
GAC
[ENA]
¡û
>W2110599159
JAHEVH010000012
Gammaproteobacteria
Dyella sp. LX-1 [JAHEVH]
108194
108120
-
Val
GAC
[ENA]
¡û
>W2110600234
JAHFVJ010000008
Gammaproteobacteria
Dyella sp. LX-66 [JAHFVJ]
115895
115821
-
Val
GAC
[ENA]
¡û
>C211186154
CP064030
Gammaproteobacteria
Dyella caseinilytica DHOB09 [CP064030]
998361
998435
+
Val
GAC
-
¡û
>C241305398
CP132911
Gammaproteobacteria
Dyella sp. A6 [CP132911]
903401
903475
+
Val
GAC
-
¡û
>C241321638
CP134867
Gammaproteobacteria
Dyella sp. BiH032 [CP134867]
4017854
4017780
-
Val
GAC
-
¡û
>W2310024329
BSNP01000002
Gammaproteobacteria
Dyella nitratireducens NBRC 111472 [BSNP]
357362
357436
+
Val
GAC
[ENA]
¡û
>W2310024393
BSNQ01000003
Gammaproteobacteria
Dyella lipolytica NBRC 111473 [BSNQ]
1906334
1906260
-
Val
GAC
[ENA]
¡û
>W2310024442
BSNR01000004
Gammaproteobacteria
Dyella flava NBRC 111979 [BSNR]
302000
302074
+
Val
GAC
[ENA]
¡û
>W2310024661
BSOA01000040
Gammaproteobacteria
Dyella flagellata NBRC 111981 [BSOA]
55263
55189
-
Val
GAC
[ENA]
¡û
>W2310024689
BSOB01000046
Gammaproteobacteria
Dyella acidisoli NBRC 111980 [BSOB]
421299
421225
-
Val
GAC
[ENA]
¡û
>W2310024717
BSOC01000001
Gammaproteobacteria
Dyella mobilis NBRC 111475 [BSOC]
392912
392986
+
Val
GAC
[ENA]
¡û
>W1511686289
LFQR01000048
Gammaproteobacteria
Frateuria defendens Hyalesthes Obsoletus HyOG [LFQR]
6138
6212
+
Val
GAC
[ENA]
¡û
>W1710560338
FONH01000015
Gammaproteobacteria
Dyella marensis [FONH]
103582
103508
-
Val
GAC
[ENA]
¡û
Identical group No.794945 (1 seq.)
>W2010578484
JAAXCW010000002
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXCW]
85372
85446
+
Val
GAC
[ENA]
¡û
Identical group No.828740 (3 seq.)
>W2010578940
JAAXLY010000053
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXLY]
10913
10987
+
Val
GAC
[ENA]
¡û
>W2010578980
JAAXLZ010000023
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXLZ]
2873
2799
-
Val
GAC
[ENA]
¡û
>W2010579012
JAAXMB010000029
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXMB]
1480
1406
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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