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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Vulcanimicrobiota
Anticodon = GAG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148540 (2 seq.)
>W2010578481
JAAXCW010000001
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXCW]
250076
249993
-
Leu
GAG
[ENA]
¡û
>W2010578967
JAAXLZ010000010
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXLZ]
6577
6492
-
Leu
GAG
[ENA]
¡û
Identical group No.167912 (1 seq.)
>W2010579001
JAAXMA010000101
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXMA]
4148
4231
+
Leu
GAG
[ENA]
¡û
Identical group No.255091 (2 seq.)
>C181193286
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
26737
26820
+
Leu
GAG
-
¡û
>W2110093606
CAJCIB010000059
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [CAJCIB]
3322
3405
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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