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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Vulcanimicrobiota
Anticodon = GCA
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.527889 (17 seq.)
>WENV180017863
FSXR01000106
[FSXR] metagenome; soil
540
615
+
Cys
GCA
[ENA]
¡û
>WENV180018252
FSYS01002771
[FSYS] metagenome; soil
2452
2527
+
Cys
GCA
[ENA]
¡û
>WENV180036043
FTLB01163141
[FTLB] metagenome; soil
135
60
-
Cys
GCA
[ENA]
¡û
>WENV183697846
OUNK010185709
[OUNK] metagenome; soil
267
342
+
Cys
GCA
[ENA]
¡û
>C181193292
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
1001177
1001252
+
Cys
GCA
-
¡û
>W141564052
JIAL01000001
Acidobacteriota
Pseudacidobacterium ailaaui PMMR2 [JIAL]
3602615
3602540
-
Cys
GCA
[ENA]
¡û
>W1810915043
QVQT01000003
Acidobacteriota
Paracidobacterium acidisoli 4G-K13 [QVQT]
193596
193521
-
Cys
GCA
[ENA]
¡û
>W2010698591
JACHEK010000012
Acidobacteriota
Silvibacterium bohemicum DSM 103733 [JACHEK]
70811
70886
+
Cys
GCA
[ENA]
¡û
>W2010781335
LMUH01000013
Acidobacteriota
Granulicella sp. S156 [LMUH]
897210
897135
-
Cys
GCA
[ENA]
¡û
>W2010781563
LMUM01000018
Acidobacteriota
Acidobacterium sp. S8 [LMUM]
113537
113462
-
Cys
GCA
[ENA]
¡û
>W2010781878
LMUT01000003
Acidobacteriota
Granulicella sp. L46 [LMUT]
554770
554845
+
Cys
GCA
[ENA]
¡û
>W2011548525
SDMK01000003
Acidobacteriota
Acidipila dinghuensis DHOF10 [SDMK]
487622
487697
+
Cys
GCA
[ENA]
¡û
>W2110024376
BMGU01000005
Acidobacteriota
Acidipila dinghuensis CGMCC 1.13007 [BMGU]
52100
52025
-
Cys
GCA
[ENA]
¡û
>W2110093612
CAJCIB010000088
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [CAJCIB]
24318
24243
-
Cys
GCA
[ENA]
¡û
>C211132796
CP060394
Acidobacteriota
Acidobacterium sp. 4Y35 [CP060394]
4591818
4591893
+
Cys
GCA
-
¡û
>C241068512
CP042806
Acidobacteriota
Terriglobus albidus ORNL [CP042806]
5170822
5170897
+
Cys
GCA
-
¡û
>W1511591118
LBHJ01000004
Acidobacteriota
Silvibacterium bohemicum S15 [LBHJ]
843716
843641
-
Cys
GCA
[ENA]
¡û
Identical group No.743544 (71 seq.)
>W1711502610
MKSV01000011
Acidobacteriota
Acidobacteriales bacterium 59-55 [MKSV]
90992
91066
+
Cys
GCA
[ENA]
¡û
>W131179184
ARME01000007
Acidobacteriota
Acidobacteriaceae bacterium KBS 89 [ARME]
934653
934727
+
Cys
GCA
[ENA]
¡û
>W131216829
ATWD01000003
Acidobacteriota
Acidobacteriaceae bacterium TAA 166 TAA166 [ATWD]
277648
277574
-
Cys
GCA
[ENA]
¡û
>WENV180017475
FSXA01001111
[FSXA] metagenome; soil
6
80
+
Cys
GCA
[ENA]
¡û
>WENV180017483
FSXA01001257
[FSXA] metagenome; soil
9245
9319
+
Cys
GCA
[ENA]
¡û
>WENV180017553
FSXH01000078
[FSXH] metagenome; soil
80
6
-
Cys
GCA
[ENA]
¡û
>WENV180017872
FSXT01000222
[FSXT] metagenome; soil
2668
2742
+
Cys
GCA
[ENA]
¡û
>WENV183093065
OLLR01000111
[OLLR] soil metagenome; soil
86673
86599
-
Cys
GCA
[ENA]
¡û
>WENV183093202
OLLV01000208
[OLLV] soil metagenome; soil
1610
1536
-
Cys
GCA
[ENA]
¡û
>WENV183697550
OUNK010001026
[OUNK] metagenome; soil
3195
3121
-
Cys
GCA
[ENA]
¡û
>WENV183697851
OUNK010195276
[OUNK] metagenome; soil
13183
13109
-
Cys
GCA
[ENA]
¡û
>WENV183697906
OUNK010317221
[OUNK] metagenome; soil
1
75
+
Cys
GCA
[ENA]
¡û
>WENV183697982
OUNK010614618
[OUNK] metagenome; soil
356
282
-
Cys
GCA
[ENA]
¡û
>WENV170008594
AOMQ01004929
[AOMQ] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
286
212
-
Cys
GCA
[ENA]
¡û
>C181193332
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
997126
997052
-
Cys
GCA
-
¡û
>W141557318
JHVA01000001
Acidobacteriota
Acidobacteriaceae bacterium KBS 146 KBS 146 [JHVA]
41186
41112
-
Cys
GCA
[ENA]
¡û
>W141817037
JQKI01000022
Acidobacteriota
Edaphobacter aggregans DSM 19364 [JQKI]
16142
16068
-
Cys
GCA
[ENA]
¡û
>W1910548809
FZOU01000002
Acidobacteriota
Granulicella rosea DSM 18704 [FZOU]
535856
535930
+
Cys
GCA
[ENA]
¡û
>W2010369941
CAHJWI010000033
Acidobacteriota
Acidobacteriaceae bacterium [CAHJWI]
27952
28026
+
Cys
GCA
[ENA]
¡û
>W2010370054
CAHJWL010000003
Acidobacteriota
Acidobacteriaceae bacterium [CAHJWL]
213762
213836
+
Cys
GCA
[ENA]
¡û
>W2010430570
FZOU01000002
Acidobacteriota
Granulicella rosea DSM 18704 [FZOU]
535856
535930
+
Cys
GCA
[ENA]
¡û
>W2010672905
JACCCU010000001
Acidobacteriota
Edaphobacter lichenicola M8UP22 [JACCCU]
2861835
2861909
+
Cys
GCA
[ENA]
¡û
>W2010672956
JACCCV010000001
Acidobacteriota
Edaphobacter lichenicola M8UP30 [JACCCV]
2299333
2299259
-
Cys
GCA
[ENA]
¡û
>W2010673025
JACCCW010000002
Acidobacteriota
Granulicella arctica X4EP2 [JACCCW]
903466
903392
-
Cys
GCA
[ENA]
¡û
>W2010698058
JACHDY010000003
Acidobacteriota
Edaphobacter lichenicola M8UP27 [JACHDY]
421750
421676
-
Cys
GCA
[ENA]
¡û
>W2010698081
JACHDZ010000001
Acidobacteriota
Edaphobacter lichenicola M8US30 [JACHDZ]
1136304
1136230
-
Cys
GCA
[ENA]
¡û
>W2010698124
JACHEA010000001
Acidobacteriota
Edaphobacter lichenicola M8UP15 [JACHEA]
1749438
1749512
+
Cys
GCA
[ENA]
¡û
>W2010698191
JACHEB010000008
Acidobacteriota
Edaphobacter lichenicola X5P2 [JACHEB]
43802
43876
+
Cys
GCA
[ENA]
¡û
>W2010703973
JACHIO010000009
Acidobacteriota
Granulicella mallensis X5P3 [JACHIO]
154818
154892
+
Cys
GCA
[ENA]
¡û
>W2010704003
JACHIP010000001
Acidobacteriota
Granulicella aggregans M8UP14 [JACHIP]
286491
286565
+
Cys
GCA
[ENA]
¡û
>W2010781174
LMUD01000039
Acidobacteriota
Granulicella sp. S190 [LMUD]
332504
332578
+
Cys
GCA
[ENA]
¡û
>W2010781347
LMUH01000024
Acidobacteriota
Granulicella sp. S156 [LMUH]
19423
19497
+
Cys
GCA
[ENA]
¡û
>W2010781823
LMUR01000020
Acidobacteriota
Granulicella sp. L60 [LMUR]
54635
54561
-
Cys
GCA
[ENA]
¡û
>W2010781833
LMUS01000001
Acidobacteriota
Granulicella sp. L56 [LMUS]
913166
913240
+
Cys
GCA
[ENA]
¡û
>W2010781912
LMUT01000018
Acidobacteriota
Granulicella sp. L46 [LMUT]
62927
62853
-
Cys
GCA
[ENA]
¡û
>W2011373419
RBIF01000002
Acidobacteriota
Edaphobacter dinghuensis EB95 [RBIF]
858429
858355
-
Cys
GCA
[ENA]
¡û
>W2011411676
RDSM01000002
Acidobacteriota
Granulicella sibirica AF10 [RDSM]
27908
27834
-
Cys
GCA
[ENA]
¡û
>W2011433921
RJKT01000001
Acidobacteriota
Granulicella sp. GAS466 [RJKT]
1324514
1324588
+
Cys
GCA
[ENA]
¡û
>W2011489922
RSDW01000001
Acidobacteriota
Edaphobacter aggregans EB153 [RSDW]
5971528
5971454
-
Cys
GCA
[ENA]
¡û
>W2011580168
SHKW01000001
Acidobacteriota
Edaphobacter modestus DSM 18101 [SHKW]
1452316
1452390
+
Cys
GCA
[ENA]
¡û
>W2011634473
SMGK01000005
Acidobacteriota
Acidipila rosea DSM 103428 [SMGK]
216843
216769
-
Cys
GCA
[ENA]
¡û
>W2011961602
VANK01000002
Acidobacteriota
Acidobacteria bacterium AB60 [VANK]
422077
422003
-
Cys
GCA
[ENA]
¡û
>W2110024306
BMGT01000002
Acidobacteriota
Edaphobacter dinghuensis CGMCC 1.12997 [BMGT]
877447
877373
-
Cys
GCA
[ENA]
¡û
>W2110027306
BMJB01000001
Acidobacteriota
Edaphobacter acidisoli CGMCC 1.15447 [BMJB]
1585699
1585773
+
Cys
GCA
[ENA]
¡û
>W2110093194
CAJCHN010000021
Gammaproteobacteria
Rhodanobacteraceae bacterium [CAJCHN]
1968
1894
-
Cys
GCA
[ENA]
¡û
>W2110093611
CAJCIB010000088
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [CAJCIB]
28403
28477
+
Cys
GCA
[ENA]
¡û
>W2110093931
CAJCIM010000189
Acidobacteriota
Acidobacteriaceae bacterium [CAJCIM]
25392
25318
-
Cys
GCA
[ENA]
¡û
>W2110094028
CAJCIP010000012
Verrucomicrobiota
Verrucomicrobia bacterium Tous-C9LFEB [CAJCIP]
23517
23591
+
Cys
GCA
[ENA]
¡û
>W2110160828
JAAVUR010000009
Acidobacteriota
Granulicella sp. dw_53 [JAAVUR]
119148
119074
-
Cys
GCA
[ENA]
¡û
>W2110161180
JAAVVA010000006
Acidobacteriota
Acidobacteriaceae bacterium dw_441 [JAAVVA]
105772
105846
+
Cys
GCA
[ENA]
¡û
>C201212248
CP048114
Acidobacteriota
Edaphobacter sp. 12200R-103 [CP048114]
1808303
1808377
+
Cys
GCA
-
¡û
>C211132741
CP060393
Acidobacteriota
Edaphobacter sp. 4G125 [CP060393]
2850630
2850704
+
Cys
GCA
-
¡û
>C231131706
CP073696
Acidobacteriota
Edaphobacter lichenicola DSM 104462 [CP073696]
771677
771603
-
Cys
GCA
-
¡û
>C231131751
CP073697
Acidobacteriota
Edaphobacter flagellatus HZ411 [CP073697]
124651
124577
-
Cys
GCA
-
¡û
>C241068298
CP042596
Acidobacteriota
Granulicella sp. WH15 [CP042596]
1400254
1400180
-
Cys
GCA
-
¡û
>C241109879
CP046444
Acidobacteriota
Granulicella sp. 5B5 [CP046444]
3834555
3834481
-
Cys
GCA
-
¡û
>W10119498
ADVX01000016
Acidobacteriota
Granulicella mallensis MP5ACTX8 [ADVX]
66918
66992
+
Cys
GCA
[ENA]
¡û
>W10119506
ADVY01000001
Acidobacteria
Acidobacterium sp. MP5ACTX9 [ADVY] MP5ACTX9 [ADVY]
292298
292224
-
Cys
GCA
[ENA]
¡û
>C11100558
CP002480
Acidobacteriota
Granulicella tundricola MP5ACTX9 [CP002480]
2039628
2039554
-
Cys
GCA
[Ensembl]
¡û
>C11122997
CP002467
Acidobacteriota
Terriglobus saanensis SP1PR4 [CP002467]
3043995
3044069
+
Cys
GCA
[Ensembl]
¡û
>W1511432659
JUGR01000001
Acidobacteriota
Terriglobus sp. TAA 43 [JUGR]
540666
540740
+
Cys
GCA
[ENA]
¡û
>W11125764
ADVX01000016
Acidobacteriota
Granulicella mallensis MP5ACTX8 [ADVX]
66918
66992
+
Cys
GCA
[ENA]
¡û
>W11125772
ADVY01000001
Acidobacteria
Acidobacterium sp. MP5ACTX9 [ADVY] MP5ACTX9 [ADVY]
292298
292224
-
Cys
GCA
[ENA]
¡û
>W11137269
AEHE01000001
Acidobacteriota
Terriglobus saanensis SP1PR4 [AEHE]
3100278
3100352
+
Cys
GCA
[ENA]
¡û
>C121006507
CP003130
Acidobacteriota
Granulicella mallensis MP5ACTX8 [CP003130]
3437501
3437575
+
Cys
GCA
[Ensembl]
¡û
>C121011825
CP003379
Acidobacteriota
Terriglobus roseus DSM 18391 [CP003379]
2127226
2127152
-
Cys
GCA
[Ensembl]
¡û
>W1610576103
LAIJ01000009
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
344719
344645
-
Cys
GCA
[ENA]
¡û
>W1710534877
FNSD01000001
Acidobacteriota
Terriglobus roseus [FNSD]
4703749
4703675
-
Cys
GCA
[ENA]
¡û
>W1710539038
FNVA01000001
Acidobacteriota
Bryocella elongata [FNVA]
560414
560340
-
Cys
GCA
[ENA]
¡û
>W1710575752
FOZL01000001
Acidobacteriota
Granulicella pectinivorans [FOZL]
3971059
3971133
+
Cys
GCA
[ENA]
¡û
>W1710694367
LAIJ01000009
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
344719
344645
-
Cys
GCA
[ENA]
¡û
Identical group No.794946 (3 seq.)
>WENV181192689
OEPS010925293
[OEPS] soil metagenome; soil
159
231
+
Cys
GCA
[ENA]
¡û
>W2010578490
JAAXCW010000002
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXCW]
65721
65650
-
Cys
GCA
[ENA]
¡û
>W2010578978
JAAXLZ010000023
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXLZ]
16065
16136
+
Cys
GCA
[ENA]
¡û
Identical group No.901863 (13 seq.)
>WENV180017896
FSXU01000071
[FSXU] metagenome; soil
177
250
+
Cys
GCA
[ENA]
¡û
>WENV183697526
OUNK010000320
[OUNK] metagenome; soil
9798
9871
+
Cys
GCA
[ENA]
¡û
>C191138619
CP035300
Gammaproteobacteria
Dyella sp. M7H15-1 [CP035300]
1467860
1467787
-
Cys
GCA
-
¡û
>W1810785120
QRBF01000001
Gammaproteobacteria
Dyella psychrodurans 4MSK11 [QRBF]
336951
337024
+
Cys
GCA
[ENA]
¡û
>W2011509753
RYZR01000002
Gammaproteobacteria
Dyella sp. DHOA06 [RYZR]
363679
363752
+
Cys
GCA
[ENA]
¡û
>W2110027226
BMIZ01000001
Gammaproteobacteria
Dyella caseinilytica CGMCC 1.15434 [BMIZ]
3128572
3128499
-
Cys
GCA
[ENA]
¡û
>W2110094429
CAJCJD010000023
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [CAJCJD]
1024
951
-
Cys
GCA
[ENA]
¡û
>W2110326007
JADIKE010000039
Gammaproteobacteria
Dyella flava DHOC52 [JADIKE]
550800
550873
+
Cys
GCA
[ENA]
¡û
>W2110326057
JADIKF010000040
Gammaproteobacteria
Dyella mobilis DHON07 [JADIKF]
284932
284859
-
Cys
GCA
[ENA]
¡û
>C211186188
CP064030
Gammaproteobacteria
Dyella caseinilytica DHOB09 [CP064030]
2473003
2472930
-
Cys
GCA
-
¡û
>W2310024399
BSNQ01000003
Gammaproteobacteria
Dyella lipolytica NBRC 111473 [BSNQ]
1093784
1093711
-
Cys
GCA
[ENA]
¡û
>W2310024456
BSNR01000014
Gammaproteobacteria
Dyella flava NBRC 111979 [BSNR]
550733
550806
+
Cys
GCA
[ENA]
¡û
>W2310024756
BSOC01000005
Gammaproteobacteria
Dyella mobilis NBRC 111475 [BSOC]
80610
80683
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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