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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Vulcanimicrobiota
Anticodon = GCT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.15469 (68 seq.)
>W1711387262
MEGL01000069
Gammaproteobacteria
Rhodanobacter sp. SCN 68-63 [MEGL]
16754
16846
+
Ser
GCT
[ENA]
¡û
>W131046170
AMSF01000015
Gammaproteobacteria
Dyella ginsengisoli LA-4 [AMSF]
249595
249503
-
Ser
GCT
[ENA]
¡û
>WENV180017619
FSXK01001340
[FSXK] metagenome; soil
2717
2809
+
Ser
GCT
[ENA]
¡û
>WENV181192308
OEPS010559448
[OEPS] soil metagenome; soil
21
113
+
Ser
GCT
[ENA]
¡û
>WENV183698122
OUNK011150699
[OUNK] metagenome; soil
110
18
-
Ser
GCT
[ENA]
¡û
>C191003498
AP018560
Gammaproteobacteria
Aerosticca soli Dysh456 [AP018560]
1749548
1749456
-
Ser
GCT
-
¡û
>C191138593
CP035300
Gammaproteobacteria
Dyella sp. M7H15-1 [CP035300]
817797
817889
+
Ser
GCT
-
¡û
>W141564931
JIBD01000011
Gammaproteobacteria
Dyella japonica UNC79MFTsu3.2 [JIBD]
134941
135033
+
Ser
GCT
[ENA]
¡û
>W1910896605
NFZS01000004
Gammaproteobacteria
Dyella jiangningensis FCAV SCS01 [NFZS]
378207
378115
-
Ser
GCT
[ENA]
¡û
>W1810485590
QAVX01000014
Gammaproteobacteria
Dyella sp. C11 [QAVX]
27320
27412
+
Ser
GCT
[ENA]
¡û
>W1810597194
QGHC01000001
Gammaproteobacteria
Fulvimonas soli DSM 14263 [QGHC]
119397
119489
+
Ser
GCT
[ENA]
¡û
>W1810628348
QICJ01000005
Gammaproteobacteria
Dyella sp. AtDHG13 [QICJ]
76144
76052
-
Ser
GCT
[ENA]
¡û
>W1810629417
QIRF01000003
Gammaproteobacteria
Dyella sp. C9 [QIRF]
438118
438210
+
Ser
GCT
[ENA]
¡û
>W1810783246
QQSY01000001
Gammaproteobacteria
Dyella solisilvae DHG54 [QQSY]
678067
677975
-
Ser
GCT
[ENA]
¡û
>W1810785076
QRBE01000001
Gammaproteobacteria
Dyella monticola 4G-K06 [QRBE]
791971
792063
+
Ser
GCT
[ENA]
¡û
>W1810785160
QRBF01000010
Gammaproteobacteria
Dyella psychrodurans 4MSK11 [QRBF]
14084
13992
-
Ser
GCT
[ENA]
¡û
>C151023712
CP007444
Gammaproteobacteria
Dyella jiangningensis SBZ3-12 [CP007444]
907093
907185
+
Ser
GCT
[Ensembl]
¡û
>C151039102
CP008884
Gammaproteobacteria
Dyella japonica A8 [CP008884]
4113524
4113432
-
Ser
GCT
[Ensembl]
¡û
>W2010534038
JAAOYS010000003
Gammaproteobacteria
Dyella sp. SG562 [JAAOYS]
334201
334293
+
Ser
GCT
[ENA]
¡û
>W2010717725
JACHYH010000002
Gammaproteobacteria
Luteibacter sp. Sphag1AF [JACHYH]
303267
303175
-
Ser
GCT
[ENA]
¡û
>W2010910245
MSZV01000001
Gammaproteobacteria
Fulvimonas soli LMG 19981 [MSZV]
29852
29944
+
Ser
GCT
[ENA]
¡û
>W2010957099
NFZS01000004
Gammaproteobacteria
Dyella jiangningensis FCAV SCS01 [NFZS]
378207
378115
-
Ser
GCT
[ENA]
¡û
>W2011404639
RCWW01000001
Gammaproteobacteria
Dyella sp. YR388 [RCWW]
2466693
2466601
-
Ser
GCT
[ENA]
¡û
>W2011509589
RYYV01000031
Gammaproteobacteria
Dyella sp. 4M-K27 [RYYV]
21604
21696
+
Ser
GCT
[ENA]
¡û
>W2011509749
RYZR01000001
Gammaproteobacteria
Dyella sp. DHOA06 [RYZR]
220485
220577
+
Ser
GCT
[ENA]
¡û
>W2011529205
SAYT01000007
Gammaproteobacteria
Dyella sp. DHC06 [SAYT]
271304
271396
+
Ser
GCT
[ENA]
¡û
>W2011603235
SIZZ01000001
Gammaproteobacteria
Dyella terrae KACC 12748 [SIZZ]
342344
342436
+
Ser
GCT
[ENA]
¡û
>W2011613343
SJTG01000001
Gammaproteobacteria
Dyella soli KACC 12747 [SJTG]
2060623
2060531
-
Ser
GCT
[ENA]
¡û
>W2011613376
SJTG01000002
Gammaproteobacteria
Dyella soli KACC 12747 [SJTG]
1405458
1405366
-
Ser
GCT
[ENA]
¡û
>W2011631231
SMCS01000001
Gammaproteobacteria
Luteibacter rhizovicinus LP_13_YM [SMCS]
260405
260497
+
Ser
GCT
[ENA]
¡û
>W2110011772
BCPR01000034
Gammaproteobacteria
Dyella sp. EPa41 [BCPR]
31917
32009
+
Ser
GCT
[ENA]
¡û
>W2110022798
BMFO01000002
Gammaproteobacteria
Arenimonas maotaiensis CGMCC 1.12726 [BMFO]
482901
482993
+
Ser
GCT
[ENA]
¡û
>W2110027245
BMIZ01000002
Gammaproteobacteria
Dyella caseinilytica CGMCC 1.15434 [BMIZ]
58944
58852
-
Ser
GCT
[ENA]
¡û
>W2110027289
BMJA01000004
Gammaproteobacteria
Dyella nitratireducens CGMCC 1.15439 [BMJA]
140580
140672
+
Ser
GCT
[ENA]
¡û
>W2110094449
CAJCJD010000193
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [CAJCJD]
12363
12271
-
Ser
GCT
[ENA]
¡û
>W2110295351
JACZZA010000002
Gammaproteobacteria
Dyella sp. 7MK23 [JACZZA]
134671
134579
-
Ser
GCT
[ENA]
¡û
>W2110325918
JADIKC010000001
Gammaproteobacteria
Dyella kyungheensis THG-B117 [JADIKC]
163469
163561
+
Ser
GCT
[ENA]
¡û
>W2110326003
JADIKE010000039
Gammaproteobacteria
Dyella flava DHOC52 [JADIKE]
154186
154278
+
Ser
GCT
[ENA]
¡û
>W2110326053
JADIKF010000040
Gammaproteobacteria
Dyella mobilis DHON07 [JADIKF]
710316
710224
-
Ser
GCT
[ENA]
¡û
>W2110403129
JADZLP010000002
Gammaproteobacteria
Rhodanobacteraceae bacterium NC3-4-326 [JADZLP]
116221
116129
-
Ser
GCT
[ENA]
¡û
>W2110403162
JADZLQ010000001
Gammaproteobacteria
Rhodanobacteraceae bacterium NC2-4-308 [JADZLQ]
828408
828316
-
Ser
GCT
[ENA]
¡û
>W2110403220
JADZLR010000002
Gammaproteobacteria
Rhodanobacteraceae bacterium NA3-4-109 [JADZLR]
1378472
1378564
+
Ser
GCT
[ENA]
¡û
>W2110425306
JAELTQ010000106
Gammaproteobacteria
Dyella sp. ASV24 [JAELTQ]
4053
4145
+
Ser
GCT
[ENA]
¡û
>W2110425505
JAELTT010000130
Gammaproteobacteria
Dyella sp. ASV21 [JAELTT]
3744
3652
-
Ser
GCT
[ENA]
¡û
>W2110557772
JAGJRS010000015
Gammaproteobacteria
Frateuria sp. MAH-13 [JAGJRS]
36142
36234
+
Ser
GCT
[ENA]
¡û
>W2110599149
JAHEVH010000008
Gammaproteobacteria
Dyella sp. LX-1 [JAHEVH]
72921
72829
-
Ser
GCT
[ENA]
¡û
>W2110600241
JAHFVJ010000020
Gammaproteobacteria
Dyella sp. LX-66 [JAHFVJ]
18206
18298
+
Ser
GCT
[ENA]
¡û
>C211133282
CP060412
Gammaproteobacteria
Dyella sp. G9 [CP060412]
870000
869908
-
Ser
GCT
-
¡û
>C211186184
CP064030
Gammaproteobacteria
Dyella caseinilytica DHOB09 [CP064030]
3053873
3053781
-
Ser
GCT
-
¡û
>C231252145
CP088251
Gammaproteobacteria
Frateuria sp. 5GH9-34 [CP088251]
2585809
2585717
-
Ser
GCT
-
¡û
>C231252192
CP088252
Gammaproteobacteria
Frateuria sp. 5GH9-11 [CP088252]
2326441
2326349
-
Ser
GCT
-
¡û
>C241305420
CP132911
Gammaproteobacteria
Dyella sp. A6 [CP132911]
2304317
2304225
-
Ser
GCT
-
¡û
>C241321642
CP134867
Gammaproteobacteria
Dyella sp. BiH032 [CP134867]
3511005
3510913
-
Ser
GCT
-
¡û
>W2310024332
BSNP01000002
Gammaproteobacteria
Dyella nitratireducens NBRC 111472 [BSNP]
785213
785305
+
Ser
GCT
[ENA]
¡û
>W2310024395
BSNQ01000003
Gammaproteobacteria
Dyella lipolytica NBRC 111473 [BSNQ]
1534555
1534463
-
Ser
GCT
[ENA]
¡û
>W2310024452
BSNR01000014
Gammaproteobacteria
Dyella flava NBRC 111979 [BSNR]
154119
154211
+
Ser
GCT
[ENA]
¡û
>W2310024644
BSOA01000008
Gammaproteobacteria
Dyella flagellata NBRC 111981 [BSOA]
49243
49335
+
Ser
GCT
[ENA]
¡û
>W2310024688
BSOB01000037
Gammaproteobacteria
Dyella acidisoli NBRC 111980 [BSOB]
37439
37347
-
Ser
GCT
[ENA]
¡û
>W2310024719
BSOC01000001
Gammaproteobacteria
Dyella mobilis NBRC 111475 [BSOC]
816961
817053
+
Ser
GCT
[ENA]
¡û
>W1511305069
JPLA01000026
Gammaproteobacteria
Dyella japonica DSM 16301 [JPLA]
57237
57145
-
Ser
GCT
[ENA]
¡û
>W1511686263
LFQR01000002
Gammaproteobacteria
Frateuria defendens Hyalesthes Obsoletus HyOG [LFQR]
18962
18870
-
Ser
GCT
[ENA]
¡û
>C161078257
CP014841
Gammaproteobacteria
Dyella thiooxydans ATSB10 [CP014841]
1349148
1349056
-
Ser
GCT
[Ensembl]
¡û
>W121113889
ALOY01000161
Gammaproteobacteria
Dyella japonica A8 [ALOY]
55776
55868
+
Ser
GCT
[ENA]
¡û
>W1710519827
FNFA01000015
Gammaproteobacteria
Dyella jiangningensis [FNFA]
81453
81545
+
Ser
GCT
[ENA]
¡û
>W1710541136
FNYC01000001
Gammaproteobacteria
Frateuria terrea [FNYC]
545662
545570
-
Ser
GCT
[ENA]
¡û
>W1710560318
FONH01000003
Gammaproteobacteria
Dyella marensis [FONH]
396356
396448
+
Ser
GCT
[ENA]
¡û
>W1710573370
FOXL01000002
Gammaproteobacteria
Frateuria terrea [FOXL]
545407
545315
-
Ser
GCT
[ENA]
¡û
>W1710575659
FOZI01000002
Gammaproteobacteria
Dyella sp. OK004 [FOZI]
212083
211991
-
Ser
GCT
[ENA]
¡û
Identical group No.20793 (1 seq.)
>W2110093622
CAJCIB010000145
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [CAJCIB]
58871
58779
-
Ser
GCT
[ENA]
¡û
Identical group No.43356 (4 seq.)
>W2010578506
JAAXCW010000008
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXCW]
111193
111106
-
Ser
GCT
[ENA]
¡û
>W2010578930
JAAXLX010000074
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXLX]
5247
5334
+
Ser
GCT
[ENA]
¡û
>W2010578992
JAAXMA010000065
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXMA]
3442
3355
-
Ser
GCT
[ENA]
¡û
>W2010579002
JAAXMB010000002
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXMB]
14332
14243
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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