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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Vulcanimicrobiota
Anticodon = GGA
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.15868 (18 seq.)
>W1711386665
MEFP01000019
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-320 [MEFP]
290451
290359
-
Ser
GGA
[ENA]
¡û
>W1711387268
MEGL01000260
Gammaproteobacteria
Rhodanobacter sp. SCN 68-63 [MEGL]
1976
1884
-
Ser
GGA
[ENA]
¡û
>W1711387513
MEGS01000013
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-25 [MEGS]
200454
200362
-
Ser
GGA
[ENA]
¡û
>W1711506707
MKWQ01000005
Gammaproteobacteria
Xanthomonadales bacterium 69-70 [MKWQ]
345742
345650
-
Ser
GGA
[ENA]
¡û
>WENV180017601
FSXK01000594
[FSXK] metagenome; soil
17059
16967
-
Ser
GGA
[ENA]
¡û
>WENV180028529
FTJE01001436
[FTJE] metagenome; soil
1083
991
-
Ser
GGA
[ENA]
¡û
>WENV183697492
OUNK010000052
[OUNK] metagenome; soil
15909
15817
-
Ser
GGA
[ENA]
¡û
>W1810785128
QRBF01000001
Gammaproteobacteria
Dyella psychrodurans 4MSK11 [QRBF]
990621
990529
-
Ser
GGA
[ENA]
¡û
>W2011509766
RYZR01000003
Gammaproteobacteria
Dyella sp. DHOA06 [RYZR]
621952
621860
-
Ser
GGA
[ENA]
¡û
>W2011651765
SNZH01000016
Gammaproteobacteria
Tahibacter aquaticus DSM 21667 [SNZH]
56892
56984
+
Ser
GGA
[ENA]
¡û
>W2110027269
BMJA01000001
Gammaproteobacteria
Dyella nitratireducens CGMCC 1.15439 [BMJA]
282334
282242
-
Ser
GGA
[ENA]
¡û
>W2110094433
CAJCJD010000077
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [CAJCJD]
3767
3859
+
Ser
GGA
[ENA]
¡û
>W2110295365
JACZZA010000007
Gammaproteobacteria
Dyella sp. 7MK23 [JACZZA]
190481
190389
-
Ser
GGA
[ENA]
¡û
>W2110325977
JADIKE010000035
Gammaproteobacteria
Dyella flava DHOC52 [JADIKE]
228963
228871
-
Ser
GGA
[ENA]
¡û
>W2110326028
JADIKF010000039
Gammaproteobacteria
Dyella mobilis DHON07 [JADIKF]
854518
854610
+
Ser
GGA
[ENA]
¡û
>W2310024352
BSNP01000007
Gammaproteobacteria
Dyella nitratireducens NBRC 111472 [BSNP]
2177640
2177732
+
Ser
GGA
[ENA]
¡û
>W2310024420
BSNR01000001
Gammaproteobacteria
Dyella flava NBRC 111979 [BSNR]
86841
86933
+
Ser
GGA
[ENA]
¡û
>W2310024735
BSOC01000002
Gammaproteobacteria
Dyella mobilis NBRC 111475 [BSOC]
854535
854627
+
Ser
GGA
[ENA]
¡û
Identical group No.47358 (1 seq.)
>W2010579009
JAAXMB010000020
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXMB]
1368
1279
-
Ser
GGA
[ENA]
¡û
Identical group No.66691 (3 seq.)
>W2010578501
JAAXCW010000008
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXCW]
56692
56778
+
Ser
GGA
[ENA]
¡û
>W2010578929
JAAXLX010000069
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXLX]
10780
10692
-
Ser
GGA
[ENA]
¡û
>W2010578971
JAAXLZ010000016
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXLZ]
23760
23848
+
Ser
GGA
[ENA]
¡û
Identical group No.79425 (1 seq.)
>W2010578991
JAAXMA010000064
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXMA]
2178
2264
+
Ser
GGA
[ENA]
¡û
Identical group No.113133 (4 seq.)
>WENV183093033
OLLR01000032
[OLLR] soil metagenome; soil
106980
107067
+
Ser
GGA
[ENA]
¡û
>C181193333
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
926479
926392
-
Ser
GGA
-
¡û
>W2010781893
LMUT01000012
Acidobacteriota
Granulicella sp. L46 [LMUT]
517317
517404
+
Ser
GGA
[ENA]
¡û
>W2110093623
CAJCIB010000146
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [CAJCIB]
6140
6053
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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