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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Vulcanimicrobiota
Anticodon = GGT
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.606722 (4 seq.)
>C181193296
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
1525616
1525691
+
Thr
GGT
-
¡û
>W1911748632
QWEV01000005
Acidobacteriota
Acidipila sp. EB88 [QWEV]
2195655
2195730
+
Thr
GGT
[ENA]
¡û
>W2011317561
QWEV01000005
Acidobacteriota
Acidipila sp. EB88 [QWEV]
2195655
2195730
+
Thr
GGT
[ENA]
¡û
>W2110093629
CAJCIB010000164
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [CAJCIB]
43767
43842
+
Thr
GGT
[ENA]
¡û
Identical group No.794952 (1 seq.)
>W2010578524
JAAXCW010000015
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXCW]
2017
1943
-
Thr
GGT
[ENA]
¡û
Identical group No.794953 (2 seq.)
>W2010578922
JAAXLW010000049
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXLW]
15608
15682
+
Thr
GGT
[ENA]
¡û
>W2010579018
JAAXMB010000044
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXMB]
2433
2507
+
Thr
GGT
[ENA]
¡û
Identical group No.852896 (1 seq.)
>W2010578899
JAAXLV010000019
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXLV]
1507
1433
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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