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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Vulcanimicrobiota
Anticodon = GTA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.111708 (4 seq.)
>W2010578522
JAAXCW010000015
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXCW]
3038
2951
-
Tyr
GTA
[ENA]
¡û
>W2010578897
JAAXLV010000019
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXLV]
2528
2441
-
Tyr
GTA
[ENA]
¡û
>W2010578920
JAAXLW010000049
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXLW]
14073
14160
+
Tyr
GTA
[ENA]
¡û
>W2010579016
JAAXMB010000044
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXMB]
898
985
+
Tyr
GTA
[ENA]
¡û
Identical group No.118613 (2 seq.)
>WENV180351812
OBLQ010108782
[OBLQ] soil metagenome; soil
316
403
+
Tyr
GTA
[ENA]
¡û
>W2110093628
CAJCIB010000164
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [CAJCIB]
43471
43558
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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