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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Vulcanimicrobiota
Anticodon = TAC
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.610865 (1 seq.)
>W2010578497
JAAXCW010000005
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXCW]
165040
164968
-
Val
TAC
[ENA]
¡û
Identical group No.662879 (1 seq.)
>W2010579007
JAAXMB010000005
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXMB]
39729
39801
+
Val
TAC
[ENA]
¡û
Identical group No.702587 (2 seq.)
>W2010578928
JAAXLX010000050
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXLX]
1937
1865
-
Val
TAC
[ENA]
¡û
>W2010578972
JAAXLZ010000020
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXLZ]
13391
13463
+
Val
TAC
[ENA]
¡û
Identical group No.852898 (1 seq.)
>W2010578952
JAAXLY010000106
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXLY]
4345
4274
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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