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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Vulcanimicrobiota
Anticodon = TAG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.211621 (9 seq.)
>WENV180017455
FSXA01000659
[FSXA] metagenome; soil
19324
19408
+
Leu
TAG
[ENA]
¡û
>WENV180019249
FTBR01000042
[FTBR] metagenome; soil
1457
1541
+
Leu
TAG
[ENA]
¡û
>WENV183093045
OLLR01000063
[OLLR] soil metagenome; soil
71106
71022
-
Leu
TAG
[ENA]
¡û
>WENV183697542
OUNK010000743
[OUNK] metagenome; soil
477
393
-
Leu
TAG
[ENA]
¡û
>WENV183697552
OUNK010001084
[OUNK] metagenome; soil
1923
1839
-
Leu
TAG
[ENA]
¡û
>C181193287
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
46978
47062
+
Leu
TAG
-
¡û
>W1810915064
QVQT01000007
Acidobacteriota
Paracidobacterium acidisoli 4G-K13 [QVQT]
126810
126894
+
Leu
TAG
[ENA]
¡û
>W2110093602
CAJCIB010000043
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [CAJCIB]
264
348
+
Leu
TAG
[ENA]
¡û
>C241068505
CP042806
Acidobacteriota
Terriglobus albidus ORNL [CP042806]
4695522
4695606
+
Leu
TAG
-
¡û
Identical group No.223780 (1 seq.)
>W2010578515
JAAXCW010000008
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXCW]
25923
25841
-
Leu
TAG
[ENA]
¡û
Identical group No.233926 (1 seq.)
>W2010579014
JAAXMB010000040
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXMB]
11759
11676
-
Leu
TAG
[ENA]
¡û
Identical group No.241508 (1 seq.)
>W2010578904
JAAXLV010000025
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXLV]
3973
4054
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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