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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Vulcanimicrobiota
Anticodon = TCC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.741452 (61 seq.)
>W1711502602
MKSV01000009
Acidobacteriota
Acidobacteriales bacterium 59-55 [MKSV]
269497
269571
+
Gly
TCC
[ENA]
¡û
>W1711575006
MNGW01000087
Acidobacteriota
Acidobacteriales bacterium 13_1_40CM_3_55_5 [MNGW]
7782
7856
+
Gly
TCC
[ENA]
¡û
>W1711575702
MNJG01000206
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_4_56_7 [MNJG]
11821
11895
+
Gly
TCC
[ENA]
¡û
>C000167
CP000360
Acidobacteriota
Candidatus Koribacter versatilis Ellin345 [CP000360]
5545681
5545607
-
Gly
TCC
[Ensembl]
¡û
>W131179130
ARMD01000013
Acidobacteriota
Acidobacteriaceae bacterium KBS 83 [ARMD]
306693
306767
+
Gly
TCC
[ENA]
¡û
>W131216799
ATWD01000001
Acidobacteriota
Acidobacteriaceae bacterium TAA 166 TAA166 [ATWD]
4221228
4221302
+
Gly
TCC
[ENA]
¡û
>WENV180304683
OBJI01260379
[OBJI] soil metagenome; soil
191
117
-
Gly
TCC
[ENA]
¡û
>WENV180584602
OCOJ01065629
[OCOJ] soil metagenome; soil
814
740
-
Gly
TCC
[ENA]
¡û
>WENV181144593
OEHO01044409
[OEHO] metagenome; unknown
182
256
+
Gly
TCC
[ENA]
¡û
>WENV181184636
OEKN01000118
[OEKN] metagenome; 1998
646
572
-
Gly
TCC
[ENA]
¡û
>WENV181186119
OEMO01000229
[OEMO] metagenome; 1998
167
241
+
Gly
TCC
[ENA]
¡û
>WENV183680114
ORMF010140139
[ORMF] groundwater metagenome; groundwater
843
769
-
Gly
TCC
[ENA]
¡û
>WENV183686933
ORMF011073127
[ORMF] groundwater metagenome; groundwater
662
588
-
Gly
TCC
[ENA]
¡û
>WENV183697833
OUNK010168334
[OUNK] metagenome; soil
791
717
-
Gly
TCC
[ENA]
¡û
>WENV170002556
AGTN01067020
[AGTN] bioreactor metagenome; poplar biomass
140
66
-
Gly
TCC
[ENA]
¡û
>WENV170564166
CZKD01000070
[CZKD] soil metagenome genome assembly CiPEHR-AK-2010-FBin.3, contig:; soil
47448
47522
+
Gly
TCC
[ENA]
¡û
>WENV170564331
CZKJ01000043
[CZKJ] soil metagenome genome assembly CiPEHR-AK-2010-FBin.11, contig:; soil
41747
41821
+
Gly
TCC
[ENA]
¡û
>WENV170564555
CZKR01000145
[CZKR] soil metagenome genome assembly CiPEHR-AK-2010-FBin.7, contig:; soil
82175
82249
+
Gly
TCC
[ENA]
¡û
>WENV170660588
JXWU01000243
[JXWU] soil metagenome; rice field; organic control Plot
238
164
-
Gly
TCC
[ENA]
¡û
>C181193297
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
1525802
1525876
+
Gly
TCC
-
¡û
>W141557304
JHVA01000001
Acidobacteriota
Acidobacteriaceae bacterium KBS 146 KBS 146 [JHVA]
1807344
1807270
-
Gly
TCC
[ENA]
¡û
>W141564040
JIAL01000001
Acidobacteriota
Pseudacidobacterium ailaaui PMMR2 [JIAL]
2184239
2184313
+
Gly
TCC
[ENA]
¡û
>W141817062
JQKI01000084
Acidobacteriota
Edaphobacter aggregans DSM 19364 [JQKI]
22664
22738
+
Gly
TCC
[ENA]
¡û
>C09100223
CP001472
Acidobacteriota
Acidobacterium capsulatum ATCC 51196 [CP001472]
3383688
3383762
+
Gly
TCC
[Ensembl]
¡û
>W1910697386
MEKR01000040
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28 [MEKR]
20682
20756
+
Gly
TCC
[ENA]
¡û
>W1810047089
OMOD01000112
Acidobacteriota
Candidatus Sulfotelmatobacter kueseliae SbA1 Peat soil MAG SbA1 [OMOD]
12406
12480
+
Gly
TCC
[ENA]
¡û
>W1810915055
QVQT01000005
Acidobacteriota
Paracidobacterium acidisoli 4G-K13 [QVQT]
514720
514794
+
Gly
TCC
[ENA]
¡û
>W2010363101
CADDZC010000074
Acidobacteriota
Acidobacteria bacterium [CADDZC]
461
387
-
Gly
TCC
[ENA]
¡û
>W2010363392
CADDZJ010000029
Acidobacteriota
Acidobacteria bacterium [CADDZJ]
33523
33449
-
Gly
TCC
[ENA]
¡û
>W2010370042
CAHJWL010000001
Acidobacteriota
Acidobacteriaceae bacterium [CAHJWL]
487721
487795
+
Gly
TCC
[ENA]
¡û
>W2010672992
JACCCW010000001
Acidobacteriota
Granulicella arctica X4EP2 [JACCCW]
2029583
2029657
+
Gly
TCC
[ENA]
¡û
>W2010698573
JACHEK010000007
Acidobacteriota
Silvibacterium bohemicum DSM 103733 [JACHEK]
481339
481413
+
Gly
TCC
[ENA]
¡û
>W2010704000
JACHIO010000043
Acidobacteriota
Granulicella mallensis X5P3 [JACHIO]
4638
4712
+
Gly
TCC
[ENA]
¡û
>W2010781362
LMUH01000026
Acidobacteriota
Granulicella sp. S156 [LMUH]
603803
603729
-
Gly
TCC
[ENA]
¡û
>W2010781850
LMUS01000004
Acidobacteriota
Granulicella sp. L56 [LMUS]
554
480
-
Gly
TCC
[ENA]
¡û
>W2010830811
MEKR01000040
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28 [MEKR]
20682
20756
+
Gly
TCC
[ENA]
¡û
>W2011373388
RBIF01000001
Acidobacteriota
Edaphobacter dinghuensis EB95 [RBIF]
1852325
1852399
+
Gly
TCC
[ENA]
¡û
>W2011433940
RJKT01000001
Acidobacteriota
Granulicella sp. GAS466 [RJKT]
5210758
5210832
+
Gly
TCC
[ENA]
¡û
>W2011489939
RSDW01000001
Acidobacteriota
Edaphobacter aggregans EB153 [RSDW]
1477852
1477778
-
Gly
TCC
[ENA]
¡û
>W2011548506
SDMK01000001
Acidobacteriota
Acidipila dinghuensis DHOF10 [SDMK]
2400140
2400214
+
Gly
TCC
[ENA]
¡û
>W2011580204
SHKW01000001
Acidobacteriota
Edaphobacter modestus DSM 18101 [SHKW]
2268954
2268880
-
Gly
TCC
[ENA]
¡û
>W2011634471
SMGK01000005
Acidobacteriota
Acidipila rosea DSM 103428 [SMGK]
339137
339211
+
Gly
TCC
[ENA]
¡û
>W2110024326
BMGT01000004
Acidobacteriota
Edaphobacter dinghuensis CGMCC 1.12997 [BMGT]
454216
454290
+
Gly
TCC
[ENA]
¡û
>W2110024341
BMGU01000001
Acidobacteriota
Acidipila dinghuensis CGMCC 1.13007 [BMGU]
2545283
2545357
+
Gly
TCC
[ENA]
¡û
>W2110027342
BMJB01000003
Acidobacteriota
Edaphobacter acidisoli CGMCC 1.15447 [BMJB]
96512
96438
-
Gly
TCC
[ENA]
¡û
>W2110093218
CAJCHN010000128
Gammaproteobacteria
Rhodanobacteraceae bacterium [CAJCHN]
34703
34777
+
Gly
TCC
[ENA]
¡û
>W2110093630
CAJCIB010000164
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [CAJCIB]
43944
44018
+
Gly
TCC
[ENA]
¡û
>W2110093936
CAJCIM010000199
Acidobacteriota
Acidobacteriaceae bacterium [CAJCIM]
763
689
-
Gly
TCC
[ENA]
¡û
>W2110160833
JAAVUR010000011
Acidobacteriota
Granulicella sp. dw_53 [JAAVUR]
202308
202382
+
Gly
TCC
[ENA]
¡û
>W2110161186
JAAVVA010000006
Acidobacteriota
Acidobacteriaceae bacterium dw_441 [JAAVVA]
487
413
-
Gly
TCC
[ENA]
¡û
>C201212235
CP048114
Acidobacteriota
Edaphobacter sp. 12200R-103 [CP048114]
20269
20343
+
Gly
TCC
-
¡û
>C211132755
CP060393
Acidobacteriota
Edaphobacter sp. 4G125 [CP060393]
3449687
3449613
-
Gly
TCC
-
¡û
>C231131743
CP073697
Acidobacteriota
Edaphobacter flagellatus HZ411 [CP073697]
1222928
1222854
-
Gly
TCC
-
¡û
>C231205609
CP085323
Acidobacteriota
Acidobacteriaceae bacterium ZG23-2 [CP085323]
2336515
2336589
+
Gly
TCC
-
¡û
>C241068510
CP042806
Acidobacteriota
Terriglobus albidus ORNL [CP042806]
5115518
5115592
+
Gly
TCC
-
¡û
>C241109896
CP046444
Acidobacteriota
Granulicella sp. 5B5 [CP046444]
1214459
1214385
-
Gly
TCC
-
¡û
>W10119476
ADVX01000005
Acidobacteriota
Granulicella mallensis MP5ACTX8 [ADVX]
25170
25244
+
Gly
TCC
[ENA]
¡û
>W11125742
ADVX01000005
Acidobacteriota
Granulicella mallensis MP5ACTX8 [ADVX]
25170
25244
+
Gly
TCC
[ENA]
¡û
>W1511591131
LBHJ01000012
Acidobacteriota
Silvibacterium bohemicum S15 [LBHJ]
481044
481118
+
Gly
TCC
[ENA]
¡û
>C121006495
CP003130
Acidobacteriota
Granulicella mallensis MP5ACTX8 [CP003130]
874610
874684
+
Gly
TCC
[Ensembl]
¡û
>W1710539043
FNVA01000002
Acidobacteriota
Bryocella elongata [FNVA]
406438
406512
+
Gly
TCC
[ENA]
¡û
Identical group No.899988 (2 seq.)
>W2010578523
JAAXCW010000015
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXCW]
2943
2870
-
Gly
TCC
[ENA]
¡û
>W2010578898
JAAXLV010000019
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXLV]
2435
2362
-
Gly
TCC
[ENA]
¡û
Identical group No.899989 (2 seq.)
>W2010578921
JAAXLW010000049
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXLW]
14167
14240
+
Gly
TCC
[ENA]
¡û
>W2010579017
JAAXMB010000044
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXMB]
992
1065
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK