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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Vulcanimicrobiota
Anticodon = TCT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.445900 (2 seq.)
>C181193317
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
4430747
4430671
-
Arg
TCT
-
¡û
>W2110093598
CAJCIB010000001
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [CAJCIB]
3520
3596
+
Arg
TCT
[ENA]
¡û
Identical group No.593407 (3 seq.)
>WENV170649105
JRHI01006422
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
2584
2509
-
Arg
TCT
[ENA]
¡û
>W2010578949
JAAXLY010000099
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXLY]
2912
2984
+
Arg
TCT
[ENA]
¡û
>W2130007143
CAJCIN010000187
Alphaproteobacteria
Rhodospirillales bacterium [CAJCIN]
3790
3863
+
Arg
TCT
[ENA]
¡û
Identical group No.610868 (2 seq.)
>W2010578512
JAAXCW010000008
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXCW]
31013
30941
-
Arg
TCT
[ENA]
¡û
>W2110094236
CAJCIV010000197
Acidobacteriota
Acidobacteriaceae bacterium [CAJCIV]
6731
6803
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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