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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Vulcanimicrobiota
Anticodon = TGG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.286496 (2 seq.)
>W2010578511
JAAXCW010000008
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXCW]
31155
31078
-
Pro
TGG
[ENA]
¡û
>W2010578948
JAAXLY010000099
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXLY]
2771
2848
+
Pro
TGG
[ENA]
¡û
Identical group No.324674 (12 seq.)
>WENV180099408
NMRC01002463
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
802
726
-
Pro
TGG
[ENA]
¡û
>WENV183093197
OLLV01000146
[OLLV] soil metagenome; soil
50985
50909
-
Pro
TGG
[ENA]
¡û
>WENV170998673
MWWJ01074975
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
351
427
+
Pro
TGG
[ENA]
¡û
>C181193322
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
3339725
3339649
-
Pro
TGG
-
¡û
>W1911748657
QWEV01000005
Acidobacteriota
Acidipila sp. EB88 [QWEV]
1156649
1156573
-
Pro
TGG
[ENA]
¡û
>W2010698579
JACHEK010000009
Acidobacteriota
Silvibacterium bohemicum DSM 103733 [JACHEK]
318971
319047
+
Pro
TGG
[ENA]
¡û
>W2011317586
QWEV01000005
Acidobacteriota
Acidipila sp. EB88 [QWEV]
1156649
1156573
-
Pro
TGG
[ENA]
¡û
>W2011634477
SMGK01000006
Acidobacteriota
Acidipila rosea DSM 103428 [SMGK]
205647
205723
+
Pro
TGG
[ENA]
¡û
>W2130007096
CAJCIB010000253
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [CAJCIB]
7256
7332
+
Pro
TGG
[ENA]
¡û
>W1511591108
LBHJ01000002
Acidobacteriota
Silvibacterium bohemicum S15 [LBHJ]
77198
77122
-
Pro
TGG
[ENA]
¡û
>W1610576080
LAIJ01000004
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
24484
24408
-
Pro
TGG
[ENA]
¡û
>W1710694344
LAIJ01000004
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
24484
24408
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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