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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Vulcanimicrobiota
Anticodon = TTT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.537049 (16 seq.)
>W1711751521
MUNV01000009
Gammaproteobacteria
Rhodanobacter sp. B04 [MUNV]
204459
204384
-
Lys
TTT
[ENA]
¡û
>WENV180017624
FSXK01001801
[FSXK] metagenome; soil
78
3
-
Lys
TTT
[ENA]
¡û
>WENV180017898
FSXU01000091
[FSXU] metagenome; soil
22
97
+
Lys
TTT
[ENA]
¡û
>WENV183697536
OUNK010000535
[OUNK] metagenome; soil
6148
6073
-
Lys
TTT
[ENA]
¡û
>W1910896601
NFZS01000004
Gammaproteobacteria
Dyella jiangningensis FCAV SCS01 [NFZS]
851533
851458
-
Lys
TTT
[ENA]
¡û
>C151023741
CP007444
Gammaproteobacteria
Dyella jiangningensis SBZ3-12 [CP007444]
3382555
3382480
-
Lys
TTT
[Ensembl]
¡û
>W2010957095
NFZS01000004
Gammaproteobacteria
Dyella jiangningensis FCAV SCS01 [NFZS]
851533
851458
-
Lys
TTT
[ENA]
¡û
>W2011404663
RCWW01000002
Gammaproteobacteria
Dyella sp. YR388 [RCWW]
293543
293468
-
Lys
TTT
[ENA]
¡û
>W2011529176
SAYT01000001
Gammaproteobacteria
Dyella sp. DHC06 [SAYT]
933980
934055
+
Lys
TTT
[ENA]
¡û
>W2110011774
BCPR01000035
Gammaproteobacteria
Dyella sp. EPa41 [BCPR]
37818
37743
-
Lys
TTT
[ENA]
¡û
>W2110094450
CAJCJD010000200
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [CAJCJD]
15163
15238
+
Lys
TTT
[ENA]
¡û
>W2110325957
JADIKC010000007
Gammaproteobacteria
Dyella kyungheensis THG-B117 [JADIKC]
210099
210024
-
Lys
TTT
[ENA]
¡û
>C211133249
CP060412
Gammaproteobacteria
Dyella sp. G9 [CP060412]
3140654
3140729
+
Lys
TTT
-
¡û
>W2310024391
BSNQ01000003
Gammaproteobacteria
Dyella lipolytica NBRC 111473 [BSNQ]
2183243
2183168
-
Lys
TTT
[ENA]
¡û
>W1511305053
JPLA01000014
Gammaproteobacteria
Dyella japonica DSM 16301 [JPLA]
96820
96745
-
Lys
TTT
[ENA]
¡û
>W1710575647
FOZI01000001
Gammaproteobacteria
Dyella sp. OK004 [FOZI]
372448
372373
-
Lys
TTT
[ENA]
¡û
Identical group No.610869 (3 seq.)
>W2010578513
JAAXCW010000008
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXCW]
29101
29027
-
Lys
TTT
[ENA]
¡û
>W2010578902
JAAXLV010000025
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXLV]
1281
1355
+
Lys
TTT
[ENA]
¡û
>W2010578950
JAAXLY010000099
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [JAAXLY]
4850
4922
+
Lys
TTT
[ENA]
¡û
Identical group No.663313 (2 seq.)
>C181193315
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
5929649
5929574
-
Lys
TTT
-
¡û
>W2110093613
CAJCIB010000089
Vulcanimicrobiota
Candidatus Eremiobacteraeota bacterium [CAJCIB]
21524
21599
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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