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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
metagenomic water samples (SRP000427)
Anticodon = CAC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.349125 (1 seq.)
>SRA1005111
SRR006907.36557
metagenomic water samples (SRP000427)
60
136
+
Val
CAC
[SRA]
Identical group No.620450 (1 seq.)
>SRA1004947
SRR006906.193084
metagenomic water samples (SRP000427)
7
82
+
Val
CAC
[SRA]
Identical group No.659693 (26 seq.)
>W1711129959
LUUM01000255
Alphaproteobacteria
Methylosinus sp. R-45379 [LUUM]
82956
82882
-
Val
CAC
[ENA]
¡û
>W1711228860
LXWX01000091
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
44567
44493
-
Val
CAC
[ENA]
¡û
>C171101472
CP019948
Alphaproteobacteria
Methylocystis bryophila S285 [CP019948]
2364652
2364726
+
Val
CAC
-
¡û
>W131163842
ARAB01000008
Alphaproteobacteria
Methylosinus sp. LW4 [ARAB]
1847245
1847171
-
Val
CAC
[ENA]
¡û
>W131166816
ARCT01000001
Alphaproteobacteria
Methylocystis rosea SV97 [ARCT]
173529
173455
-
Val
CAC
[ENA]
¡û
>WENV180272316
OBEQ012367734
[OBEQ] groundwater metagenome; groundwater
320
394
+
Val
CAC
[ENA]
¢þ
>W141188886
AYNA01000026
Alphaproteobacteria
Methylocystis sp. SB2 [AYNA]
40406
40332
-
Val
CAC
[ENA]
¡û
>W141216034
AZUO01000001
Alphaproteobacteria
Methylosinus sp. LW3 [AZUO]
3441026
3440952
-
Val
CAC
[ENA]
¡û
>WENV183665013
ORJL010432991
[ORJL] groundwater metagenome; groundwater
787
861
+
Val
CAC
[ENA]
¢þ
>WENV183674829
ORJL011435875
[ORJL] groundwater metagenome; groundwater
134
208
+
Val
CAC
[ENA]
¢þ
>C181089630
CP023737
Alphaproteobacteria
Methylosinus trichosporium OB3b [CP023737]
3026979
3027053
+
Val
CAC
-
¡û
>C191118905
CP034086
Alphaproteobacteria
Methylocystis rosea GW6 [CP034086]
2554340
2554266
-
Val
CAC
-
¡û
>W141701406
JMKQ01000006
Alphaproteobacteria
Methylocystis sp. LW5 [JMKQ]
1901315
1901241
-
Val
CAC
[ENA]
¡û
>W141821228
JQNK01000009
Alphaproteobacteria
Methylosinus sp. PW1 [JQNK]
1381431
1381357
-
Val
CAC
[ENA]
¡û
>W1911494338
OBKE01003717
Unclassified
bacterium [OBKE]
742
668
-
Val
CAC
[ENA]
¡û
>W1911747246
QWDD01000001
Alphaproteobacteria
Methylocystis hirsuta CSC1 [QWDD]
3202056
3201982
-
Val
CAC
[ENA]
¡û
>W1911747247
QWDD01000001
Alphaproteobacteria
Methylocystis hirsuta CSC1 [QWDD]
3200208
3200134
-
Val
CAC
[ENA]
¡û
>W1810330585
PUIV01000054
Alphaproteobacteria
Methylosinus sporium DSM 17706 [PUIV]
3055
3129
+
Val
CAC
[ENA]
¡û
>SRA1005120
SRR006907.43956
metagenomic water samples (SRP000427)
165
91
-
Val
CAC
[SRA]
>W1810397196
PYDU01000005
Alphaproteobacteria
Methylocystis sp. MitZ-2018 [PYDU]
121649
121575
-
Val
CAC
[ENA]
¡û
>W10118832
ADVE01000024
Alphaproteobacteria
Methylosinus trichosporium OB3b [ADVE]
14385
14311
-
Val
CAC
[ENA]
¡û
>W11125004
ADVE01000024
Alphaproteobacteria
Methylosinus trichosporium OB3b [ADVE]
14385
14311
-
Val
CAC
[ENA]
¡û
>W11150249
AEVM01000022
Alphaproteobacteria
Methylocystis sp. ATCC 49242 [AEVM]
49846
49920
+
Val
CAC
[ENA]
¡û
>C131019936
HE956757
Alphaproteobacteria
Methylocystis sp. SC2 [HE956757]
1274295
1274221
-
Val
CAC
[Ensembl]
¡û
>W1610941032
LUUM01000255
Alphaproteobacteria
Methylosinus sp. R-45379 [LUUM]
82956
82882
-
Val
CAC
[ENA]
¡û
>W1611012777
LXWX01000091
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
44567
44493
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK